Analysis of interatomic Contacts of Structural Units in PDB entry:
5ICR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ICR entry

There are 3 chains in PDB entry 5ICR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 7	ASP 630
B	ILE 8	THR 629
C	PHE 7	THR 74

There are102 helices in PDB entry 5ICR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	32	Right-handed alpha
Helix 2	AA2	A	56	74	Right-handed alpha
Helix 3	AA3	A	87	101	Right-handed alpha
Helix 4	AA4	A	115	127	Right-handed alpha
Helix 5	AA5	A	134	146	Right-handed alpha
Helix 6	AA6	A	160	162	Right-handed 310
Helix 7	AA7	A	163	170	Right-handed 310
Helix 8	AA8	A	201	216	Right-handed alpha
Helix 9	AA9	A	231	241	Right-handed alpha
Helix 10	AB1	A	242	245	Right-handed 310
Helix 11	AB2	A	252	259	Right-handed alpha
Helix 12	AB3	A	260	268	Right-handed alpha
Helix 13	AB4	A	282	293	Right-handed alpha
Helix 14	AB5	A	318	330	Right-handed alpha
Helix 15	AB6	A	331	333	Right-handed 310
Helix 16	AB7	A	335	337	Right-handed 310
Helix 17	AB8	A	346	349	Right-handed 310
Helix 18	AB9	A	368	373	Right-handed alpha
Helix 19	AC1	A	434	443	Right-handed alpha
Helix 20	AC2	A	485	487	Right-handed 310
Helix 21	AC3	A	496	508	Right-handed alpha
Helix 22	AC4	A	524	526	Right-handed 310
Helix 23	AC5	A	563	580	Right-handed alpha
Helix 24	AC6	A	603	614	Right-handed alpha
Helix 25	AC7	B	20	33	Right-handed alpha
Helix 26	AC8	B	56	74	Right-handed alpha
Helix 27	AC9	B	87	101	Right-handed alpha
Helix 28	AD1	B	115	127	Right-handed alpha
Helix 29	AD2	B	134	146	Right-handed alpha
Helix 30	AD3	B	147	148	Right-handed 310
Helix 31	AD4	B	149	153	Right-handed 310
Helix 32	AD5	B	160	162	Right-handed 310
Helix 33	AD6	B	163	170	Right-handed 310
Helix 34	AD7	B	201	216	Right-handed alpha
Helix 35	AD8	B	231	241	Right-handed alpha
Helix 36	AD9	B	242	245	Right-handed 310
Helix 37	AE1	B	252	259	Right-handed alpha
Helix 38	AE2	B	260	268	Right-handed alpha
Helix 39	AE3	B	282	293	Right-handed alpha
Helix 40	AE4	B	318	330	Right-handed alpha
Helix 41	AE5	B	331	333	Right-handed 310
Helix 42	AE6	B	335	337	Right-handed 310
Helix 43	AE7	B	346	349	Right-handed 310
Helix 44	AE8	B	368	373	Right-handed alpha
Helix 45	AE9	B	434	443	Right-handed alpha
Helix 46	AF1	B	485	487	Right-handed 310
Helix 47	AF2	B	496	508	Right-handed alpha
Helix 48	AF3	B	524	526	Right-handed 310
Helix 49	AF4	B	527	531	Right-handed 310
Helix 50	AF5	B	563	580	Right-handed alpha
Helix 51	AF6	B	603	614	Right-handed alpha
Helix 52	AF7	B	614	619	Right-handed alpha
Helix 53	AF8	C	20	33	Right-handed alpha
Helix 54	AF9	C	56	74	Right-handed alpha
Helix 55	AG1	C	87	100	Right-handed alpha
Helix 56	AG2	C	115	127	Right-handed alpha
Helix 57	AG3	C	134	146	Right-handed alpha
Helix 58	AG4	C	160	162	Right-handed 310
Helix 59	AG5	C	163	170	Right-handed 310
Helix 60	AG6	C	201	216	Right-handed alpha
Helix 61	AG7	C	231	241	Right-handed alpha
Helix 62	AG8	C	242	245	Right-handed 310
Helix 63	AG9	C	252	259	Right-handed alpha
Helix 64	AH1	C	260	268	Right-handed alpha
Helix 65	AH2	C	282	293	Right-handed alpha
Helix 66	AH3	C	318	330	Right-handed alpha
Helix 67	AH4	C	331	333	Right-handed 310
Helix 68	AH5	C	335	337	Right-handed 310
Helix 69	AH6	C	346	349	Right-handed 310
Helix 70	AH7	C	368	373	Right-handed alpha
Helix 71	AH8	C	434	443	Right-handed alpha
Helix 72	AH9	C	485	487	Right-handed 310
Helix 73	AI1	C	496	508	Right-handed alpha
Helix 74	AI2	C	524	526	Right-handed 310
Helix 75	AI3	C	527	533	Right-handed alpha
Helix 76	AI4	C	534	537	Right-handed 310
Helix 77	AI5	C	563	580	Right-handed alpha
Helix 78	AI6	C	603	614	Right-handed alpha
Helix 79	AI7	D	20	31	Right-handed alpha
Helix 80	AI8	D	56	74	Right-handed alpha
Helix 81	AI9	D	87	101	Right-handed alpha
Helix 82	AJ1	D	115	127	Right-handed alpha
Helix 83	AJ2	D	134	146	Right-handed alpha
Helix 84	AJ3	D	160	162	Right-handed 310
Helix 85	AJ4	D	163	170	Right-handed 310
Helix 86	AJ5	D	201	216	Right-handed alpha
Helix 87	AJ6	D	231	241	Right-handed alpha
Helix 88	AJ7	D	242	245	Right-handed 310
Helix 89	AJ8	D	252	259	Right-handed alpha
Helix 90	AJ9	D	260	268	Right-handed alpha
Helix 91	AK1	D	282	293	Right-handed alpha
Helix 92	AK2	D	318	330	Right-handed alpha
Helix 93	AK3	D	331	333	Right-handed 310
Helix 94	AK4	D	335	337	Right-handed 310
Helix 95	AK5	D	346	349	Right-handed 310
Helix 96	AK6	D	368	373	Right-handed alpha
Helix 97	AK7	D	434	443	Right-handed alpha
Helix 98	AK8	D	485	487	Right-handed 310
Helix 99	AK9	D	496	507	Right-handed alpha
Helix 100	AL1	D	524	526	Right-handed 310
Helix 101	AL2	D	563	580	Right-handed alpha
Helix 102	AL3	D	603	614	Right-handed alpha

There are 28 sheets in PDB entry 5ICR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	55	first strand
Strand 2	A	36	42	anti-parallel
Strand 3	A	248	250	parallel
Strand 4	A	222	225	parallel
Strand 5	A	277	281	parallel
Strand 6	A	307	312	parallel
Strand 7	A	339	344	parallel
Strand 8	A	351	354	anti-parallel
Strand 9	A	394	395	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	79	82	parallel
Strand 3	A	130	133	parallel
Strand 4	A	155	158	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	187	first strand
Strand 2	A	195	200	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	367	first strand
Strand 2	A	386	390	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	411	first strand
Strand 2	A	399	405	anti-parallel
Strand 3	A	418	424	anti-parallel
Strand 4	A	465	474	anti-parallel
Strand 5	A	477	483	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	A	493	495	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	522	first strand
Strand 2	A	547	555	anti-parallel
Strand 3	A	583	589	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	36	42	anti-parallel
Strand 3	B	248	250	parallel
Strand 4	B	222	225	parallel
Strand 5	B	277	281	parallel
Strand 6	B	307	312	parallel
Strand 7	B	339	344	parallel
Strand 8	B	351	354	anti-parallel
Strand 9	B	394	395	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	79	82	parallel
Strand 3	B	130	133	parallel
Strand 4	B	155	158	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	187	first strand
Strand 2	B	195	200	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	367	first strand
Strand 2	B	386	390	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	411	first strand
Strand 2	B	399	405	anti-parallel
Strand 3	B	418	424	anti-parallel
Strand 4	B	465	474	anti-parallel
Strand 5	B	477	483	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	490	first strand
Strand 2	B	493	495	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	522	first strand
Strand 2	B	547	555	anti-parallel
Strand 3	B	585	589	parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	55	first strand
Strand 2	C	36	42	anti-parallel
Strand 3	C	248	250	parallel
Strand 4	C	222	225	parallel
Strand 5	C	277	281	parallel
Strand 6	C	307	313	parallel
Strand 7	C	339	344	parallel
Strand 8	C	351	354	anti-parallel
Strand 9	C	394	395	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	106	first strand
Strand 2	C	79	82	parallel
Strand 3	C	130	133	parallel
Strand 4	C	155	158	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	186	first strand
Strand 2	C	196	200	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	367	first strand
Strand 2	C	386	390	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	411	first strand
Strand 2	C	399	405	anti-parallel
Strand 3	C	418	424	anti-parallel
Strand 4	C	465	474	anti-parallel
Strand 5	C	477	483	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	490	first strand
Strand 2	C	493	495	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	522	first strand
Strand 2	C	547	555	anti-parallel
Strand 3	C	585	589	parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	55	first strand
Strand 2	D	36	42	anti-parallel
Strand 3	D	248	250	parallel
Strand 4	D	222	225	parallel
Strand 5	D	277	281	parallel
Strand 6	D	307	313	parallel
Strand 7	D	339	344	parallel
Strand 8	D	351	354	anti-parallel
Strand 9	D	394	395	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	106	first strand
Strand 2	D	79	82	parallel
Strand 3	D	130	133	parallel
Strand 4	D	155	158	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	187	first strand
Strand 2	D	195	200	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	367	first strand
Strand 2	D	386	390	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	411	first strand
Strand 2	D	399	405	anti-parallel
Strand 3	D	418	424	anti-parallel
Strand 4	D	465	474	anti-parallel
Strand 5	D	477	483	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	488	490	first strand
Strand 2	D	493	495	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	522	first strand
Strand 2	D	547	555	anti-parallel
Strand 3	D	583	589	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ICR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ICR