Analysis of interatomic Contacts of Structural Units in PDB entry:
5ICV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ICV entry

There are 4 chains in PDB entry 5ICV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5GLY 184
B
 VAL 5GLY 184
C
 MET 1VAL 4
D
 MET 1VAL 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5ICV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 11Right-handed 310
Helix 2
AA2
A
19 21Right-handed 310
Helix 3
AA3
A
22 34Right-handed alpha
Helix 4
AA4
A
39 49Right-handed alpha
Helix 5
AA5
A
75 77Right-handed 310
Helix 6
AA6
A
78 82Right-handed 310
Helix 7
AA7
A
105 108Right-handed 310
Helix 8
AA8
A
111 128Right-handed alpha
Helix 9
AA9
A
143 152Right-handed alpha
Helix 10
AB1
B
8 11Right-handed 310
Helix 11
AB2
B
19 21Right-handed 310
Helix 12
AB3
B
22 34Right-handed alpha
Helix 13
AB4
B
39 49Right-handed alpha
Helix 14
AB5
B
75 77Right-handed 310
Helix 15
AB6
B
78 82Right-handed 310
Helix 16
AB7
B
105 108Right-handed 310
Helix 17
AB8
B
111 128Right-handed alpha
Helix 18
AB9
B
143 152Right-handed alpha
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There are 2 sheets in PDB entry 5ICV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
52 59anti-parallel
Strand 3
A
62 73anti-parallel
Strand 4
A
94 103anti-parallel
Strand 5
A
132 140parallel
Strand 6
A
170 180anti-parallel
Strand 7
A
156 167anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
52 59anti-parallel
Strand 3
B
62 73anti-parallel
Strand 4
B
94 103anti-parallel
Strand 5
B
132 140parallel
Strand 6
B
170 180anti-parallel
Strand 7
B
156 167anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il