Analysis of interatomic Contacts of Structural Units in PDB entry:
5IDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IDM entry

There are 2 chains in PDB entry 5IDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 378HIS 554
B
 ARG 380HIS 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5IDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
385 401Right-handed alpha
Helix 2
AA2
A
421 440Right-handed alpha
Helix 3
AA3
A
441 443Right-handed 310
Helix 4
AA4
A
456 463Right-handed alpha
Helix 5
AA5
A
485 490Right-handed alpha
Helix 6
AA6
A
508 520Right-handed alpha
Helix 7
AA7
B
385 401Right-handed alpha
Helix 8
AA8
B
420 442Right-handed alpha
Helix 9
AA9
B
456 463Right-handed alpha
Helix 10
AB1
B
485 490Right-handed alpha
Helix 11
AB2
B
508 520Right-handed alpha
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There are 4 sheets in PDB entry 5IDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 384first strand
Strand 2
A
416 420anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 410first strand
Strand 2
A
447 455parallel
Strand 3
A
472 479anti-parallel
Strand 4
A
534 541anti-parallel
Strand 5
A
523 528anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 552first strand
Strand 2
B
404 411anti-parallel
Strand 3
B
446 455parallel
Strand 4
B
472 479anti-parallel
Strand 5
B
533 541anti-parallel
Strand 6
B
523 529anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 384first strand
Strand 2
B
416 419anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il