Analysis of interatomic Contacts of Structural Units in PDB entry:
5IDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IDO entry

There is 1 chain in PDB entry 5IDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 190GLU 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5IDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
205 217Right-handed alpha
Helix 2
AA2
A
223 233Right-handed alpha
Helix 3
AA3
A
234 236Right-handed 310
Helix 4
AA4
A
237 245Right-handed alpha
Helix 5
AA5
A
245 264Right-handed alpha
Helix 6
AA6
A
266 288Right-handed alpha
Helix 7
AA7
A
297 303Right-handed alpha
Helix 8
AA8
A
318 324Right-handed alpha
Helix 9
AA9
A
329 344Right-handed alpha
Helix 10
AB1
A
380 383Right-handed 310
Helix 11
AB2
A
395 411Right-handed alpha
Helix 12
AB3
A
433 442Right-handed alpha
Helix 13
AB4
A
465 470Right-handed 310
Helix 14
AB5
A
478 493Right-handed alpha
Helix 15
AB6
A
496 511Right-handed alpha
Helix 16
AB7
A
515 519Right-handed 310
Helix 17
AB8
A
522 537Right-handed alpha
Helix 18
AB9
A
544 548Right-handed 310
Helix 19
AC1
A
571 596Right-handed alpha
Helix 20
AC2
A
615 618Right-handed 310
Helix 21
AC3
A
667 685Right-handed alpha
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There are 4 sheets in PDB entry 5IDO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
202 203anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 296first strand
Strand 2
A
311 317anti-parallel
Strand 3
A
472 475parallel
Strand 4
A
361 364anti-parallel
Strand 5
A
351 354anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 420first strand
Strand 2
A
426 431anti-parallel
Strand 3
A
385 390anti-parallel
Strand 4
A
454 458anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 603first strand
Strand 2
A
612 613anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il