Analysis of interatomic Contacts of Structural Units in PDB entry:
5IDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IDV entry

There is 1 chain in PDB entry 5IDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 17HIS 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5IDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 76Right-handed 310
Helix 2
AA2
A
77 86Right-handed alpha
Helix 3
AA3
A
104 106Right-handed 310
Helix 4
AA4
A
107 114Right-handed alpha
Helix 5
AA5
A
128 134Right-handed alpha
Helix 6
AA6
A
135 139Right-handed 310
Helix 7
AA7
A
142 153Right-handed alpha
Helix 8
AA8
A
155 161Right-handed alpha
Helix 9
AA9
A
164 168Right-handed 310
Helix 10
AB1
A
178 194Right-handed alpha
Helix 11
AB2
A
208 224Right-handed alpha
Helix 12
AB3
A
234 240Right-handed alpha
Helix 13
AB4
A
257 265Right-handed alpha
Helix 14
AB5
A
266 274Right-handed alpha
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There are 2 sheets in PDB entry 5IDV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 62first strand
Strand 2
A
39 47anti-parallel
Strand 3
A
93 98anti-parallel
Strand 4
A
101 102anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
197 201parallel
Strand 3
A
227 231parallel
Strand 4
A
67 71parallel
Strand 5
A
243 248parallel
Strand 6
A
251 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il