Analysis of interatomic Contacts of Structural Units in PDB entry:
5IE3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IE3 entry

There are 2 chains in PDB entry 5IE3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 511
B	MET 1	LEU 511

There are 36 helices in PDB entry 5IE3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	17	Right-handed alpha
Helix 2	AA2	A	33	51	Right-handed alpha
Helix 3	AA3	A	66	79	Right-handed alpha
Helix 4	AA4	A	91	102	Right-handed alpha
Helix 5	AA5	A	114	124	Right-handed alpha
Helix 6	AA6	A	184	199	Right-handed alpha
Helix 7	AA7	A	214	220	Right-handed alpha
Helix 8	AA8	A	222	228	Right-handed alpha
Helix 9	AA9	A	241	252	Right-handed alpha
Helix 10	AB1	A	260	274	Right-handed alpha
Helix 11	AB2	A	293	305	Right-handed alpha
Helix 12	AB3	A	315	318	Right-handed 310
Helix 13	AB4	A	377	384	Right-handed alpha
Helix 14	AB5	A	411	413	Right-handed 310
Helix 15	AB6	A	422	431	Right-handed alpha
Helix 16	AB7	A	466	478	Right-handed alpha
Helix 17	AB8	A	479	483	Right-handed 310
Helix 18	AB9	A	502	511	Right-handed alpha
Helix 19	AC1	B	5	17	Right-handed alpha
Helix 20	AC2	B	33	51	Right-handed alpha
Helix 21	AC3	B	66	79	Right-handed alpha
Helix 22	AC4	B	91	102	Right-handed alpha
Helix 23	AC5	B	114	124	Right-handed alpha
Helix 24	AC6	B	184	199	Right-handed alpha
Helix 25	AC7	B	214	220	Right-handed alpha
Helix 26	AC8	B	222	228	Right-handed alpha
Helix 27	AC9	B	244	252	Right-handed alpha
Helix 28	AD1	B	260	274	Right-handed alpha
Helix 29	AD2	B	293	305	Right-handed alpha
Helix 30	AD3	B	315	318	Right-handed 310
Helix 31	AD4	B	377	384	Right-handed alpha
Helix 32	AD5	B	411	413	Right-handed 310
Helix 33	AD6	B	422	431	Right-handed alpha
Helix 34	AD7	B	466	478	Right-handed alpha
Helix 35	AD8	B	479	483	Right-handed 310
Helix 36	AD9	B	502	511	Right-handed alpha

There are 16 sheets in PDB entry 5IE3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	21	25	anti-parallel
Strand 3	A	231	234	parallel
Strand 4	A	205	207	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	85	first strand
Strand 2	A	58	61	parallel
Strand 3	A	104	110	parallel
Strand 4	A	127	132	parallel
Strand 5	A	141	142	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	179	183	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	259	first strand
Strand 2	A	284	287	parallel
Strand 3	A	308	314	parallel
Strand 4	A	319	323	anti-parallel
Strand 5	A	339	340	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	348	first strand
Strand 2	A	361	366	anti-parallel
Strand 3	A	389	398	anti-parallel
Strand 4	A	385	386	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	348	first strand
Strand 2	A	361	366	anti-parallel
Strand 3	A	389	398	anti-parallel
Strand 4	A	404	409	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	416	first strand
Strand 2	A	419	421	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	446	first strand
Strand 2	A	450	459	anti-parallel
Strand 3	A	486	489	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	21	25	anti-parallel
Strand 3	B	231	234	parallel
Strand 4	B	205	207	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	58	62	parallel
Strand 3	B	104	109	parallel
Strand 4	B	127	132	parallel
Strand 5	B	141	142	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	169	first strand
Strand 2	B	179	183	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	259	first strand
Strand 2	B	284	287	parallel
Strand 3	B	308	314	parallel
Strand 4	B	319	323	anti-parallel
Strand 5	B	339	340	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	348	first strand
Strand 2	B	361	366	anti-parallel
Strand 3	B	389	398	anti-parallel
Strand 4	B	385	386	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	348	first strand
Strand 2	B	361	366	anti-parallel
Strand 3	B	389	398	anti-parallel
Strand 4	B	404	409	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	416	first strand
Strand 2	B	419	421	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	446	first strand
Strand 2	B	450	459	anti-parallel
Strand 3	B	486	489	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IE3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IE3