Analysis of interatomic Contacts of Structural Units in PDB entry:
5IEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IEE entry

There are 2 chains in PDB entry 5IEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 33ARG 966
B
 PHE 30ARG 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5IEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 38Right-handed 310
Helix 2
AA2
A
40 43Right-handed 310
Helix 3
AA3
A
44 52Right-handed alpha
Helix 4
AA4
A
393 406Right-handed alpha
Helix 5
AA5
A
412 416Right-handed 310
Helix 6
AA6
A
427 441Right-handed alpha
Helix 7
AA7
A
451 455Right-handed 310
Helix 8
AA8
A
470 481Right-handed alpha
Helix 9
AA9
A
499 508Right-handed alpha
Helix 10
AB1
A
536 547Right-handed alpha
Helix 11
AB2
A
573 577Right-handed 310
Helix 12
AB3
A
584 588Right-handed 310
Helix 13
AB4
A
589 594Right-handed alpha
Helix 14
AB5
A
596 612Right-handed alpha
Helix 15
AB6
A
629 633Right-handed 310
Helix 16
AB7
A
644 661Right-handed alpha
Helix 17
AB8
A
678 691Right-handed alpha
Helix 18
AB9
A
707 711Right-handed 310
Helix 19
AC1
A
712 729Right-handed alpha
Helix 20
AC2
A
729 744Right-handed alpha
Helix 21
AC3
A
750 755Right-handed alpha
Helix 22
AC4
A
758 762Right-handed 310
Helix 23
AC5
A
841 846Right-handed alpha
Helix 24
AC6
A
874 879Right-handed alpha
Helix 25
AC7
B
47 51Right-handed 310
Helix 26
AC8
B
90 92Right-handed 310
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There are 13 sheets in PDB entry 5IEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 69first strand
Strand 2
A
74 80anti-parallel
Strand 3
A
86 94anti-parallel
Strand 4
A
125 126anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 69first strand
Strand 2
A
74 80anti-parallel
Strand 3
A
86 94anti-parallel
Strand 4
A
98 105anti-parallel
Strand 5
A
384 389anti-parallel
Strand 6
A
332 337anti-parallel
Strand 7
A
323 327anti-parallel
Strand 8
A
277 280anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 133first strand
Strand 2
A
137 142anti-parallel
Strand 3
A
147 152anti-parallel
Strand 4
A
157 162anti-parallel
Strand 5
A
165 170anti-parallel
Strand 6
A
266 273anti-parallel
Strand 7
A
177 178anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 133first strand
Strand 2
A
137 142anti-parallel
Strand 3
A
147 152anti-parallel
Strand 4
A
157 162anti-parallel
Strand 5
A
165 170anti-parallel
Strand 6
A
266 273anti-parallel
Strand 7
A
372 379anti-parallel
Strand 8
A
343 350anti-parallel
Strand 9
A
299 301anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
255 257anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 636first strand
Strand 2
A
621 623parallel
Strand 3
A
559 563parallel
Strand 4
A
484 488parallel
Strand 5
A
447 450parallel
Strand 6
A
418 420parallel
Strand 7
A
695 697parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 494first strand
Strand 2
A
527 530anti-parallel
Strand 3
A
522 524anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 749first strand
Strand 2
A
768 770anti-parallel
Strand 3
A
774 776anti-parallel
Strand 4
A
824 827anti-parallel
Strand 5
A
797 800anti-parallel
Strand 6
A
806 808anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
786 791first strand
Strand 2
A
811 816anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
830 834first strand
Strand 2
A
850 855anti-parallel
Strand 3
A
911 917parallel
Strand 4
A
947 951anti-parallel
Strand 5
A
939 942anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
862 868first strand
Strand 2
A
883 890anti-parallel
Strand 3
A
893 898anti-parallel
Strand 4
A
961 966anti-parallel
Strand 5
A
924 929anti-parallel
Strand 6
A
935 936anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
45 46anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 77first strand
Strand 2
B
85 88anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il