Analysis of interatomic Contacts of Structural Units in PDB entry:
5IF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IF9 entry

There are 2 chains in PDB entry 5IF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9PRO 270
B
 VAL 9THR 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5IF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 38Right-handed alpha
Helix 2
AA2
A
51 57Right-handed alpha
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
67 73Right-handed alpha
Helix 5
AA5
A
77 82Right-handed alpha
Helix 6
AA6
A
95 99Right-handed 310
Helix 7
AA7
A
100 107Right-handed alpha
Helix 8
AA8
A
110 112Right-handed 310
Helix 9
AA9
A
113 121Right-handed alpha
Helix 10
AB1
A
138 148Right-handed alpha
Helix 11
AB2
A
164 179Right-handed alpha
Helix 12
AB3
A
198 211Right-handed alpha
Helix 13
AB4
A
242 262Right-handed alpha
Helix 14
AB5
B
23 38Right-handed alpha
Helix 15
AB6
B
51 57Right-handed alpha
Helix 16
AB7
B
60 64Right-handed 310
Helix 17
AB8
B
67 73Right-handed alpha
Helix 18
AB9
B
77 82Right-handed alpha
Helix 19
AC1
B
95 99Right-handed 310
Helix 20
AC2
B
100 106Right-handed alpha
Helix 21
AC3
B
110 112Right-handed 310
Helix 22
AC4
B
113 122Right-handed alpha
Helix 23
AC5
B
138 148Right-handed alpha
Helix 24
AC6
B
164 178Right-handed alpha
Helix 25
AC7
B
198 211Right-handed alpha
Helix 26
AC8
B
242 262Right-handed alpha
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There are 2 sheets in PDB entry 5IF9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
90 92anti-parallel
Strand 3
A
42 46parallel
Strand 4
A
128 132parallel
Strand 5
A
11 15parallel
Strand 6
A
150 156parallel
Strand 7
A
184 191parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
90 92anti-parallel
Strand 3
B
42 46parallel
Strand 4
B
128 132parallel
Strand 5
B
11 15parallel
Strand 6
B
150 156parallel
Strand 7
B
184 191parallel
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