Analysis of interatomic Contacts of Structural Units in PDB entry:
5IFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IFJ entry

There are 10 chains in PDB entry 5IFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	PRO 228
B	GLN 1	PRO 229
C	PRO 1	PRO 9
D	GLU 1	LYS 229
E	GLN 1	PRO 229
F	PRO 1	PRO 9
G	GLU 1	LYS 229
H	GLN 1	PRO 229
I	PRO 1	PRO 9
J	GLU 1	SER 35

There are 32 helices in PDB entry 5IFJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	37	Right-handed 310
Helix 2	AA2	A	95	99	Right-handed 310
Helix 3	AA3	A	112	115	Right-handed 310
Helix 4	AA4	A	171	173	Right-handed 310
Helix 5	AA5	A	216	219	Right-handed 310
Helix 6	AA6	B	95	99	Right-handed 310
Helix 7	AA7	B	142	148	Right-handed alpha
Helix 8	AA8	B	202	209	Right-handed alpha
Helix 9	AA9	D	29	37	Right-handed 310
Helix 10	AB1	D	95	99	Right-handed 310
Helix 11	AB2	D	171	173	Right-handed 310
Helix 12	AB3	D	200	204	Right-handed 310
Helix 13	AB4	D	216	219	Right-handed 310
Helix 14	AB5	E	95	99	Right-handed 310
Helix 15	AB6	E	142	148	Right-handed alpha
Helix 16	AB7	E	202	209	Right-handed alpha
Helix 17	AB8	G	29	37	Right-handed 310
Helix 18	AB9	G	95	99	Right-handed 310
Helix 19	AC1	G	112	115	Right-handed 310
Helix 20	AC2	G	171	173	Right-handed 310
Helix 21	AC3	G	216	219	Right-handed 310
Helix 22	AC4	H	95	99	Right-handed 310
Helix 23	AC5	H	142	147	Right-handed alpha
Helix 24	AC6	H	202	209	Right-handed alpha
Helix 25	AC7	J	29	37	Right-handed 310
Helix 26	AC8	J	95	99	Right-handed 310
Helix 27	AC9	J	112	115	Right-handed 310
Helix 28	AD1	J	171	173	Right-handed 310
Helix 29	AD2	J	216	219	Right-handed 310
Helix 30	AD3	K	95	99	Right-handed 310
Helix 31	AD4	K	142	148	Right-handed alpha
Helix 32	AD5	K	202	209	Right-handed alpha

There are 49 sheets in PDB entry 5IFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	19	26	anti-parallel
Strand 3	A	86	91	anti-parallel
Strand 4	A	76	81	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	122	126	parallel
Strand 3	A	100	106	anti-parallel
Strand 4	A	39	44	anti-parallel
Strand 5	A	51	56	anti-parallel
Strand 6	A	65	67	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	122	126	parallel
Strand 3	A	100	106	anti-parallel
Strand 4	A	117	118	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	150	160	anti-parallel
Strand 3	A	191	200	anti-parallel
Strand 4	A	178	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	150	160	anti-parallel
Strand 3	A	191	200	anti-parallel
Strand 4	A	184	185	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	210	215	anti-parallel
Strand 3	A	220	225	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	86	91	anti-parallel
Strand 4	B	76	83	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	14	first strand
Strand 2	B	122	127	parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	39	44	anti-parallel
Strand 5	B	51	56	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	14	first strand
Strand 2	B	122	127	parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	116	118	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	139	first strand
Strand 2	B	151	160	anti-parallel
Strand 3	B	193	201	anti-parallel
Strand 4	B	180	182	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	139	first strand
Strand 2	B	151	160	anti-parallel
Strand 3	B	193	201	anti-parallel
Strand 4	B	186	187	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	166	171	anti-parallel
Strand 3	B	212	218	anti-parallel
Strand 4	B	221	227	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	19	26	anti-parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	76	81	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	122	126	parallel
Strand 3	D	100	106	anti-parallel
Strand 4	D	39	44	anti-parallel
Strand 5	D	51	56	anti-parallel
Strand 6	D	65	67	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	122	126	parallel
Strand 3	D	100	106	anti-parallel
Strand 4	D	117	118	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	151	160	anti-parallel
Strand 3	D	191	199	anti-parallel
Strand 4	D	178	180	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	151	160	anti-parallel
Strand 3	D	191	199	anti-parallel
Strand 4	D	184	185	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	169	first strand
Strand 2	D	209	215	anti-parallel
Strand 3	D	220	226	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	86	91	anti-parallel
Strand 4	E	76	83	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	14	first strand
Strand 2	E	122	127	parallel
Strand 3	E	100	107	anti-parallel
Strand 4	E	39	44	anti-parallel
Strand 5	E	51	56	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	14	first strand
Strand 2	E	122	127	parallel
Strand 3	E	100	107	anti-parallel
Strand 4	E	116	118	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	139	first strand
Strand 2	E	151	160	anti-parallel
Strand 3	E	193	201	anti-parallel
Strand 4	E	180	182	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	139	first strand
Strand 2	E	151	160	anti-parallel
Strand 3	E	193	201	anti-parallel
Strand 4	E	186	187	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	167	first strand
Strand 2	E	216	218	anti-parallel
Strand 3	E	221	223	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	176	first strand
Strand 2	E	169	171	anti-parallel
Strand 3	E	212	213	anti-parallel
Strand 4	E	226	227	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	19	26	anti-parallel
Strand 3	G	86	91	anti-parallel
Strand 4	G	76	81	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	122	126	parallel
Strand 3	G	100	106	anti-parallel
Strand 4	G	39	44	anti-parallel
Strand 5	G	51	56	anti-parallel
Strand 6	G	65	67	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	122	126	parallel
Strand 3	G	100	106	anti-parallel
Strand 4	G	117	118	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	139	first strand
Strand 2	G	152	160	anti-parallel
Strand 3	G	191	198	anti-parallel
Strand 4	G	178	180	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	139	first strand
Strand 2	G	152	160	anti-parallel
Strand 3	G	191	198	anti-parallel
Strand 4	G	184	185	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	166	169	first strand
Strand 2	G	209	215	anti-parallel
Strand 3	G	220	226	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	86	91	anti-parallel
Strand 4	H	76	83	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	14	first strand
Strand 2	H	122	127	parallel
Strand 3	H	100	107	anti-parallel
Strand 4	H	39	44	anti-parallel
Strand 5	H	51	56	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	14	first strand
Strand 2	H	122	127	parallel
Strand 3	H	100	107	anti-parallel
Strand 4	H	116	118	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	139	first strand
Strand 2	H	151	160	anti-parallel
Strand 3	H	193	201	anti-parallel
Strand 4	H	180	182	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	139	first strand
Strand 2	H	151	160	anti-parallel
Strand 3	H	193	201	anti-parallel
Strand 4	H	186	187	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	175	176	first strand
Strand 2	H	166	170	anti-parallel
Strand 3	H	212	218	anti-parallel
Strand 4	H	221	227	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	19	26	anti-parallel
Strand 3	J	86	91	anti-parallel
Strand 4	J	76	81	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	13	first strand
Strand 2	J	122	126	parallel
Strand 3	J	100	106	anti-parallel
Strand 4	J	39	44	anti-parallel
Strand 5	J	50	56	anti-parallel
Strand 6	J	65	67	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	13	first strand
Strand 2	J	122	126	parallel
Strand 3	J	100	106	anti-parallel
Strand 4	J	117	118	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	135	139	first strand
Strand 2	J	151	160	anti-parallel
Strand 3	J	191	199	anti-parallel
Strand 4	J	178	180	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	135	139	first strand
Strand 2	J	151	160	anti-parallel
Strand 3	J	191	199	anti-parallel
Strand 4	J	184	185	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	166	169	first strand
Strand 2	J	209	215	anti-parallel
Strand 3	J	220	226	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	6	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	86	91	anti-parallel
Strand 4	K	76	83	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	14	first strand
Strand 2	K	122	127	parallel
Strand 3	K	100	107	anti-parallel
Strand 4	K	39	44	anti-parallel
Strand 5	K	51	56	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	14	first strand
Strand 2	K	122	127	parallel
Strand 3	K	100	107	anti-parallel
Strand 4	K	116	118	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	135	139	first strand
Strand 2	K	151	160	anti-parallel
Strand 3	K	193	201	anti-parallel
Strand 4	K	180	182	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	135	139	first strand
Strand 2	K	151	160	anti-parallel
Strand 3	K	193	201	anti-parallel
Strand 4	K	186	187	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	166	170	first strand
Strand 2	K	212	218	anti-parallel
Strand 3	K	221	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IFJ