Analysis of interatomic Contacts of Structural Units in PDB entry:
5IFU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IFU entry

There are 2 chains in PDB entry 5IFU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 251	TYR 746
B	HIS 245	TYR 746

There are 30 helices in PDB entry 5IFU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	261	273	Right-handed alpha
Helix 2	AA2	A	288	309	Right-handed alpha
Helix 3	AA3	A	367	371	Right-handed 310
Helix 4	AA4	A	374	378	Right-handed 310
Helix 5	AA5	A	416	438	Right-handed alpha
Helix 6	AA6	A	484	491	Right-handed alpha
Helix 7	AA7	A	513	524	Right-handed alpha
Helix 8	AA8	A	532	536	Right-handed 310
Helix 9	AA9	A	551	569	Right-handed alpha
Helix 10	AB1	A	582	593	Right-handed alpha
Helix 11	AB2	A	602	609	Right-handed alpha
Helix 12	AB3	A	628	654	Right-handed alpha
Helix 13	AB4	A	661	663	Right-handed 310
Helix 14	AB5	A	664	671	Right-handed alpha
Helix 15	AB6	A	682	698	Right-handed alpha
Helix 16	AB7	B	261	273	Right-handed alpha
Helix 17	AB8	B	288	309	Right-handed alpha
Helix 18	AB9	B	361	372	Right-handed alpha
Helix 19	AC1	B	374	378	Right-handed 310
Helix 20	AC2	B	416	438	Right-handed alpha
Helix 21	AC3	B	484	490	Right-handed alpha
Helix 22	AC4	B	513	524	Right-handed alpha
Helix 23	AC5	B	532	536	Right-handed 310
Helix 24	AC6	B	553	569	Right-handed alpha
Helix 25	AC7	B	582	593	Right-handed alpha
Helix 26	AC8	B	602	608	Right-handed alpha
Helix 27	AC9	B	628	654	Right-handed alpha
Helix 28	AD1	B	661	663	Right-handed 310
Helix 29	AD2	B	664	670	Right-handed alpha
Helix 30	AD3	B	684	697	Right-handed alpha

There are 10 sheets in PDB entry 5IFU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	285	287	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	380	387	parallel
Strand 3	A	406	414	anti-parallel
Strand 4	A	505	512	anti-parallel
Strand 5	A	472	483	anti-parallel
Strand 6	A	459	467	anti-parallel
Strand 7	A	444	447	anti-parallel
Strand 8	A	712	717	anti-parallel
Strand 9	A	738	745	anti-parallel
Strand 10	A	674	679	anti-parallel
Strand 11	A	656	658	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	380	387	parallel
Strand 3	A	406	414	anti-parallel
Strand 4	A	505	512	anti-parallel
Strand 5	A	472	483	anti-parallel
Strand 6	A	738	745	parallel
Strand 7	A	674	679	anti-parallel
Strand 8	A	656	658	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	318	320	anti-parallel
Strand 3	B	390	391	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	495	first strand
Strand 2	A	501	503	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	575	first strand
Strand 2	A	540	544	parallel
Strand 3	A	597	601	parallel
Strand 4	A	610	615	anti-parallel
Strand 5	A	621	625	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	285	287	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	313	first strand
Strand 2	B	380	387	parallel
Strand 3	B	406	414	anti-parallel
Strand 4	B	505	512	anti-parallel
Strand 5	B	472	483	anti-parallel
Strand 6	B	459	467	anti-parallel
Strand 7	B	444	447	anti-parallel
Strand 8	B	712	717	anti-parallel
Strand 9	B	738	743	anti-parallel
Strand 10	B	674	679	anti-parallel
Strand 11	B	656	658	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	495	first strand
Strand 2	B	501	503	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	575	first strand
Strand 2	B	540	544	parallel
Strand 3	B	597	601	parallel
Strand 4	B	610	615	anti-parallel
Strand 5	B	621	625	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IFU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IFU