Analysis of interatomic Contacts of Structural Units in PDB entry:
5IGQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IGQ entry

There are 7 chains in PDB entry 5IGQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 391	VAL 731
U	SER 354	ASP 364
B	GLU 391	VAL 731
V	SER 354	TYR 361
C	GLU 391	VAL 731
W	SER 354	TYR 361
D	GLU 391	TRP 705

There are 12 helices in PDB entry 5IGQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	391	400	Right-handed alpha
Helix 2	AA2	A	450	454	Right-handed alpha
Helix 3	AA3	B	392	400	Right-handed alpha
Helix 4	AA4	B	450	454	Right-handed alpha
Helix 5	AA5	C	392	400	Right-handed alpha
Helix 6	AA6	C	450	454	Right-handed alpha
Helix 7	AA7	D	392	400	Right-handed alpha
Helix 8	AA8	D	450	454	Right-handed alpha
Helix 9	AA9	E	392	400	Right-handed alpha
Helix 10	AB1	E	450	454	Right-handed alpha
Helix 11	AB2	F	392	400	Right-handed alpha
Helix 12	AB3	F	450	454	Right-handed alpha

There are 42 sheets in PDB entry 5IGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	412	first strand
Strand 2	A	724	731	anti-parallel
Strand 3	A	715	720	anti-parallel
Strand 4	A	700	705	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	429	first strand
Strand 2	A	435	440	anti-parallel
Strand 3	A	444	449	anti-parallel
Strand 4	A	465	468	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	478	first strand
Strand 2	A	485	490	anti-parallel
Strand 3	A	495	499	anti-parallel
Strand 4	A	505	509	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	521	first strand
Strand 2	A	528	533	anti-parallel
Strand 3	A	537	542	anti-parallel
Strand 4	A	550	553	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	563	first strand
Strand 2	A	570	575	anti-parallel
Strand 3	A	579	584	anti-parallel
Strand 4	A	593	596	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	607	first strand
Strand 2	A	612	617	anti-parallel
Strand 3	A	621	626	anti-parallel
Strand 4	A	634	636	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	651	first strand
Strand 2	A	654	659	anti-parallel
Strand 3	A	663	668	anti-parallel
Strand 4	A	676	679	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	412	first strand
Strand 2	B	724	731	anti-parallel
Strand 3	B	715	720	anti-parallel
Strand 4	B	700	705	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	429	first strand
Strand 2	B	435	440	anti-parallel
Strand 3	B	444	449	anti-parallel
Strand 4	B	465	468	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	478	first strand
Strand 2	B	485	490	anti-parallel
Strand 3	B	494	499	anti-parallel
Strand 4	B	505	510	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	521	first strand
Strand 2	B	528	533	anti-parallel
Strand 3	B	537	542	anti-parallel
Strand 4	B	550	553	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	563	first strand
Strand 2	B	570	575	anti-parallel
Strand 3	B	580	584	anti-parallel
Strand 4	B	593	595	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	607	first strand
Strand 2	B	612	617	anti-parallel
Strand 3	B	621	626	anti-parallel
Strand 4	B	634	636	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	648	651	first strand
Strand 2	B	654	659	anti-parallel
Strand 3	B	663	668	anti-parallel
Strand 4	B	676	679	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	412	first strand
Strand 2	C	724	731	anti-parallel
Strand 3	C	715	720	anti-parallel
Strand 4	C	700	705	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	424	429	first strand
Strand 2	C	435	440	anti-parallel
Strand 3	C	444	449	anti-parallel
Strand 4	C	465	468	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	478	first strand
Strand 2	C	485	490	anti-parallel
Strand 3	C	495	499	anti-parallel
Strand 4	C	505	509	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	516	521	first strand
Strand 2	C	528	533	anti-parallel
Strand 3	C	537	542	anti-parallel
Strand 4	C	550	553	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	558	563	first strand
Strand 2	C	570	575	anti-parallel
Strand 3	C	579	584	anti-parallel
Strand 4	C	593	596	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	602	607	first strand
Strand 2	C	612	617	anti-parallel
Strand 3	C	621	626	anti-parallel
Strand 4	C	634	636	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	648	651	first strand
Strand 2	C	654	659	anti-parallel
Strand 3	C	663	668	anti-parallel
Strand 4	C	676	679	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	412	first strand
Strand 2	D	724	731	anti-parallel
Strand 3	D	715	720	anti-parallel
Strand 4	D	700	705	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	429	first strand
Strand 2	D	435	440	anti-parallel
Strand 3	D	444	449	anti-parallel
Strand 4	D	465	468	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	478	first strand
Strand 2	D	485	490	anti-parallel
Strand 3	D	494	499	anti-parallel
Strand 4	D	505	510	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	516	521	first strand
Strand 2	D	528	533	anti-parallel
Strand 3	D	537	542	anti-parallel
Strand 4	D	550	553	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	558	563	first strand
Strand 2	D	570	575	anti-parallel
Strand 3	D	579	584	anti-parallel
Strand 4	D	593	596	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	602	607	first strand
Strand 2	D	612	617	anti-parallel
Strand 3	D	621	626	anti-parallel
Strand 4	D	634	636	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	648	651	first strand
Strand 2	D	654	659	anti-parallel
Strand 3	D	663	668	anti-parallel
Strand 4	D	676	679	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	404	412	first strand
Strand 2	E	724	731	anti-parallel
Strand 3	E	715	720	anti-parallel
Strand 4	E	700	705	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	424	429	first strand
Strand 2	E	435	440	anti-parallel
Strand 3	E	444	449	anti-parallel
Strand 4	E	465	468	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	473	478	first strand
Strand 2	E	485	490	anti-parallel
Strand 3	E	495	499	anti-parallel
Strand 4	E	505	509	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	516	521	first strand
Strand 2	E	528	533	anti-parallel
Strand 3	E	537	542	anti-parallel
Strand 4	E	550	553	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	558	563	first strand
Strand 2	E	570	575	anti-parallel
Strand 3	E	579	584	anti-parallel
Strand 4	E	593	596	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	602	607	first strand
Strand 2	E	612	617	anti-parallel
Strand 3	E	621	626	anti-parallel
Strand 4	E	634	636	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	648	651	first strand
Strand 2	E	654	659	anti-parallel
Strand 3	E	663	668	anti-parallel
Strand 4	E	676	679	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	404	412	first strand
Strand 2	F	724	731	anti-parallel
Strand 3	F	715	720	anti-parallel
Strand 4	F	700	705	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	424	429	first strand
Strand 2	F	435	440	anti-parallel
Strand 3	F	444	449	anti-parallel
Strand 4	F	465	468	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	473	478	first strand
Strand 2	F	485	490	anti-parallel
Strand 3	F	494	499	anti-parallel
Strand 4	F	505	510	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	516	521	first strand
Strand 2	F	528	533	anti-parallel
Strand 3	F	537	542	anti-parallel
Strand 4	F	550	553	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	558	563	first strand
Strand 2	F	570	575	anti-parallel
Strand 3	F	580	584	anti-parallel
Strand 4	F	593	595	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	602	607	first strand
Strand 2	F	612	617	anti-parallel
Strand 3	F	621	626	anti-parallel
Strand 4	F	634	636	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	648	651	first strand
Strand 2	F	654	659	anti-parallel
Strand 3	F	663	668	anti-parallel
Strand 4	F	676	679	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IGQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IGQ