Analysis of interatomic Contacts of Structural Units in PDB entry:
5II4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5II4 entry

There is 1 chain in PDB entry 5II4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3669LYS 4145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5II4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3683 3699Right-handed alpha
Helix 2
AA2
A
3709 3719Right-handed alpha
Helix 3
AA3
A
3733 3740Right-handed alpha
Helix 4
AA4
A
3749 3756Right-handed alpha
Helix 5
AA5
A
3757 3764Right-handed alpha
Helix 6
AA6
A
3795 3797Right-handed 310
Helix 7
AA7
A
3798 3808Right-handed alpha
Helix 8
AA8
A
3820 3831Right-handed alpha
Helix 9
AA9
A
3852 3868Right-handed alpha
Helix 10
AB1
A
3876 3886Right-handed alpha
Helix 11
AB2
A
3895 3897Right-handed 310
Helix 12
AB3
A
3898 3905Right-handed alpha
Helix 13
AB4
A
3939 3950Right-handed alpha
Helix 14
AB5
A
3953 3964Right-handed alpha
Helix 15
AB6
A
3971 3979Right-handed alpha
Helix 16
AB7
A
3981 3994Right-handed alpha
Helix 17
AB8
A
4002 4019Right-handed alpha
Helix 18
AB9
A
4023 4038Right-handed alpha
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There are 8 sheets in PDB entry 5II4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3702 3705first strand
Strand 2
A
3674 3677parallel
Strand 3
A
3726 3730parallel
Strand 4
A
3925 3933anti-parallel
Strand 5
A
3773 3778anti-parallel
Strand 6
A
3968 3969anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3702 3705first strand
Strand 2
A
3674 3677parallel
Strand 3
A
3726 3730parallel
Strand 4
A
3925 3933anti-parallel
Strand 5
A
3995 3996parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3765 3766first strand
Strand 2
A
3769 3770anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3812 3814first strand
Strand 2
A
3889 3894parallel
Strand 3
A
3781 3785anti-parallel
Strand 4
A
3909 3912anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3834 3839first strand
Strand 2
A
3842 3849anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4039 4042first strand
Strand 2
A
4051 4055anti-parallel
Strand 3
A
4086 4091anti-parallel
Strand 4
A
4104 4105parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4075 4079first strand
Strand 2
A
4065 4072anti-parallel
Strand 3
A
4118 4129anti-parallel
Strand 4
A
4107 4111anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4075 4079first strand
Strand 2
A
4065 4072anti-parallel
Strand 3
A
4118 4129anti-parallel
Strand 4
A
4134 4144anti-parallel
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