Analysis of interatomic Contacts of Structural Units in PDB entry:
5IIC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IIC entry

There are 2 chains in PDB entry 5IIC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3969	SER 4448
B	GLY 3974	ASP 4149

There are 34 helices in PDB entry 5IIC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3985	4001	Right-handed alpha
Helix 2	AA2	A	4011	4021	Right-handed alpha
Helix 3	AA3	A	4033	4042	Right-handed alpha
Helix 4	AA4	A	4051	4057	Right-handed alpha
Helix 5	AA5	A	4059	4066	Right-handed alpha
Helix 6	AA6	A	4097	4099	Right-handed 310
Helix 7	AA7	A	4100	4111	Right-handed alpha
Helix 8	AA8	A	4122	4133	Right-handed alpha
Helix 9	AA9	A	4154	4170	Right-handed alpha
Helix 10	AB1	A	4178	4188	Right-handed alpha
Helix 11	AB2	A	4197	4207	Right-handed alpha
Helix 12	AB3	A	4241	4252	Right-handed alpha
Helix 13	AB4	A	4255	4266	Right-handed alpha
Helix 14	AB5	A	4273	4281	Right-handed alpha
Helix 15	AB6	A	4283	4296	Right-handed alpha
Helix 16	AB7	A	4304	4322	Right-handed alpha
Helix 17	AB8	A	4325	4338	Right-handed alpha
Helix 18	AB9	B	3986	4001	Right-handed alpha
Helix 19	AC1	B	4011	4023	Right-handed alpha
Helix 20	AC2	B	4033	4042	Right-handed alpha
Helix 21	AC3	B	4051	4058	Right-handed alpha
Helix 22	AC4	B	4059	4066	Right-handed alpha
Helix 23	AC5	B	4097	4099	Right-handed 310
Helix 24	AC6	B	4100	4111	Right-handed alpha
Helix 25	AC7	B	4122	4133	Right-handed alpha
Helix 26	AC8	B	4154	4170	Right-handed alpha
Helix 27	AC9	B	4178	4188	Right-handed alpha
Helix 28	AD1	B	4197	4207	Right-handed alpha
Helix 29	AD2	B	4241	4252	Right-handed alpha
Helix 30	AD3	B	4255	4266	Right-handed alpha
Helix 31	AD4	B	4273	4281	Right-handed alpha
Helix 32	AD5	B	4283	4296	Right-handed alpha
Helix 33	AD6	B	4303	4322	Right-handed alpha
Helix 34	AD7	B	4325	4338	Right-handed alpha

There are 16 sheets in PDB entry 5IIC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4004	4007	first strand
Strand 2	A	3976	3980	parallel
Strand 3	A	4028	4032	parallel
Strand 4	A	4227	4235	anti-parallel
Strand 5	A	4075	4080	anti-parallel
Strand 6	A	4270	4271	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4004	4007	first strand
Strand 2	A	3976	3980	parallel
Strand 3	A	4028	4032	parallel
Strand 4	A	4227	4235	anti-parallel
Strand 5	A	4297	4298	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4067	4068	first strand
Strand 2	A	4071	4072	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4114	4116	first strand
Strand 2	A	4191	4196	parallel
Strand 3	A	4083	4087	anti-parallel
Strand 4	A	4211	4214	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4136	4141	first strand
Strand 2	A	4144	4151	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4341	4344	first strand
Strand 2	A	4353	4358	anti-parallel
Strand 3	A	4387	4393	anti-parallel
Strand 4	B	4387	4393	anti-parallel
Strand 5	B	4353	4357	anti-parallel
Strand 6	B	4341	4344	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4406	4407	first strand
Strand 2	A	4387	4393	parallel
Strand 3	B	4387	4393	anti-parallel
Strand 4	B	4406	4407	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4377	4381	first strand
Strand 2	A	4369	4374	anti-parallel
Strand 3	A	4417	4430	anti-parallel
Strand 4	A	4409	4414	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4377	4381	first strand
Strand 2	A	4369	4374	anti-parallel
Strand 3	A	4417	4430	anti-parallel
Strand 4	A	4437	4445	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4003	4007	first strand
Strand 2	B	3975	3979	parallel
Strand 3	B	4028	4032	parallel
Strand 4	B	4227	4235	anti-parallel
Strand 5	B	4075	4080	anti-parallel
Strand 6	B	4270	4271	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4003	4007	first strand
Strand 2	B	3975	3979	parallel
Strand 3	B	4028	4032	parallel
Strand 4	B	4227	4235	anti-parallel
Strand 5	B	4297	4298	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4067	4068	first strand
Strand 2	B	4071	4072	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4114	4116	first strand
Strand 2	B	4191	4196	parallel
Strand 3	B	4083	4087	anti-parallel
Strand 4	B	4211	4214	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4139	4141	first strand
Strand 2	B	4144	4146	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4377	4382	first strand
Strand 2	B	4369	4374	anti-parallel
Strand 3	B	4417	4430	anti-parallel
Strand 4	B	4412	4414	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4377	4382	first strand
Strand 2	B	4369	4374	anti-parallel
Strand 3	B	4417	4430	anti-parallel
Strand 4	B	4437	4446	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IIC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IIC