Analysis of interatomic Contacts of Structural Units in PDB entry:
5IIG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IIG entry

There is 1 chain in PDB entry 5IIG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5IIG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 9Right-handed alpha
Helix 2
AA2
A
12 16Right-handed 310
Helix 3
AA3
A
21 35Right-handed alpha
Helix 4
AA4
A
41 87Right-handed alpha
Helix 5
AA5
A
95 138Right-handed alpha
Helix 6
AA6
A
142 152Right-handed alpha
Helix 7
AA7
A
159 178Right-handed alpha
Helix 8
AA8
A
207 216Right-handed alpha
Helix 9
AA9
A
247 256Right-handed alpha
Helix 10
AB1
A
301 310Right-handed alpha
Helix 11
AB2
A
313 318Right-handed alpha
Helix 12
AB3
A
318 325Right-handed alpha
Helix 13
AB4
A
328 349Right-handed alpha
Helix 14
AB5
A
438 446Right-handed alpha
Helix 15
AB6
A
457 467Right-handed alpha
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There are 2 sheets in PDB entry 5IIG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 300first strand
Strand 2
A
275 286anti-parallel
Strand 3
A
260 268anti-parallel
Strand 4
A
236 243anti-parallel
Strand 5
A
352 364anti-parallel
Strand 6
A
372 384anti-parallel
Strand 7
A
417 419anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 300first strand
Strand 2
A
275 286anti-parallel
Strand 3
A
260 268anti-parallel
Strand 4
A
236 243anti-parallel
Strand 5
A
352 364anti-parallel
Strand 6
A
372 384anti-parallel
Strand 7
A
423 432anti-parallel
Strand 8
A
194 203anti-parallel
Strand 9
A
450 452anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il