Analysis of interatomic Contacts of Structural Units in PDB entry:
5IIH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IIH entry

There is 1 chain in PDB entry 5IIH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 4ALA 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5IIH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
15 31Right-handed alpha
Helix 3
AA3
A
35 56Right-handed alpha
Helix 4
AA4
A
65 77Right-handed alpha
Helix 5
AA5
A
79 84Right-handed alpha
Helix 6
AA6
A
84 91Right-handed alpha
Helix 7
AA7
A
96 105Right-handed alpha
Helix 8
AA8
A
118 129Right-handed alpha
Helix 9
AA9
A
129 145Right-handed alpha
Helix 10
AB1
A
149 168Right-handed alpha
Helix 11
AB2
A
172 222Right-handed alpha
Helix 12
AB3
A
226 247Right-handed alpha
Helix 13
AB4
A
248 266Right-handed alpha
Helix 14
AB5
A
266 271Right-handed alpha
Helix 15
AB6
A
273 279Right-handed alpha
Helix 16
AB7
A
281 292Right-handed alpha
Helix 17
AB8
A
304 309Right-handed alpha
Helix 18
AB9
A
313 321Right-handed alpha
Helix 19
AC1
A
321 336Right-handed alpha
Helix 20
AC2
A
341 362Right-handed alpha
Helix 21
AC3
A
364 370Right-handed alpha
Helix 22
AC4
A
371 375Right-handed 310
Helix 23
AC5
A
376 414Right-handed alpha
Helix 24
AC6
A
418 437Right-handed alpha
Helix 25
AC7
A
440 442Right-handed 310
Helix 26
AC8
A
443 466Right-handed alpha
Helix 27
AC9
A
469 478Right-handed alpha
Helix 28
AD1
A
482 489Right-handed alpha
Helix 29
AD2
A
502 507Right-handed 310
Helix 30
AD3
A
509 514Right-handed 310
Helix 31
AD4
A
516 535Right-handed alpha
Helix 32
AD5
A
539 559Right-handed alpha
Helix 33
AD6
A
562 581Right-handed alpha
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There are no sheets in PDB entry 5IIH

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