Analysis of interatomic Contacts of Structural Units in PDB entry:
5IIQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IIQ entry

There is 1 chain in PDB entry 5IIQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5IIQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 9Right-handed alpha
Helix 2
AA2
A
21 36Right-handed alpha
Helix 3
AA3
A
41 87Right-handed alpha
Helix 4
AA4
A
95 138Right-handed alpha
Helix 5
AA5
A
142 153Right-handed alpha
Helix 6
AA6
A
160 176Right-handed alpha
Helix 7
AA7
A
207 219Right-handed alpha
Helix 8
AA8
A
231 234Right-handed 310
Helix 9
AA9
A
247 255Right-handed alpha
Helix 10
AB1
A
285 289Right-handed 310
Helix 11
AB2
A
303 310Right-handed alpha
Helix 12
AB3
A
313 325Right-handed alpha
Helix 13
AB4
A
328 349Right-handed alpha
Helix 14
AB5
A
413 415Right-handed 310
Helix 15
AB6
A
438 446Right-handed alpha
Helix 16
AB7
A
457 467Right-handed alpha
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There are 2 sheets in PDB entry 5IIQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 300first strand
Strand 2
A
275 282anti-parallel
Strand 3
A
261 268anti-parallel
Strand 4
A
236 243anti-parallel
Strand 5
A
352 364anti-parallel
Strand 6
A
372 384anti-parallel
Strand 7
A
417 419anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 300first strand
Strand 2
A
275 282anti-parallel
Strand 3
A
261 268anti-parallel
Strand 4
A
236 243anti-parallel
Strand 5
A
352 364anti-parallel
Strand 6
A
372 384anti-parallel
Strand 7
A
423 432anti-parallel
Strand 8
A
194 203anti-parallel
Strand 9
A
450 452anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il