Analysis of interatomic Contacts of Structural Units in PDB entry:
5IJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IJ0 entry

There are 2 chains in PDB entry 5IJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1VAL 437
B
MET 1GLN 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5IJ0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
10 28Right-handed alpha
Helix 2
AA2
A
46 50Right-handed 310
Helix 3
AA3
A
72 80Right-handed alpha
Helix 4
AA4
A
81 86Right-handed 310
Helix 5
AA5
A
88 90Right-handed 310
Helix 6
AA6
A
102 108Right-handed alpha
Helix 7
AA7
A
110 113Right-handed 310
Helix 8
AA8
A
114 129Right-handed alpha
Helix 9
AA9
A
143 162Right-handed alpha
Helix 10
AB1
A
182 196Right-handed alpha
Helix 11
AB2
A
206 216Right-handed alpha
Helix 12
AB3
A
223 244Right-handed alpha
Helix 13
AB4
A
251 260Right-handed alpha
Helix 14
AB5
A
279 284Right-handed alpha
Helix 15
AB6
A
287 296Right-handed alpha
Helix 16
AB7
A
297 301Right-handed 310
Helix 17
AB8
A
306 310Right-handed 310
Helix 18
AB9
A
324 337Right-handed alpha
Helix 19
AC1
A
382 401Right-handed alpha
Helix 20
AC2
A
404 411Right-handed alpha
Helix 21
AC3
A
414 437Right-handed alpha
Helix 22
AC4
B
11 29Right-handed alpha
Helix 23
AC5
B
40 46Right-handed alpha
Helix 24
AC6
B
47 49Right-handed 310
Helix 25
AC7
B
69 79Right-handed alpha
Helix 26
AC8
B
80 84Right-handed 310
Helix 27
AC9
B
86 88Right-handed 310
Helix 28
AD1
B
100 107Right-handed alpha
Helix 29
AD2
B
107 126Right-handed alpha
Helix 30
AD3
B
141 159Right-handed alpha
Helix 31
AD4
B
180 196Right-handed alpha
Helix 32
AD5
B
203 216Right-handed alpha
Helix 33
AD6
B
221 236Right-handed alpha
Helix 34
AD7
B
237 242Right-handed alpha
Helix 35
AD8
B
249 258Right-handed alpha
Helix 36
AD9
B
278 282Right-handed 310
Helix 37
AE1
B
285 294Right-handed alpha
Helix 38
AE2
B
295 299Right-handed 310
Helix 39
AE3
B
322 337Right-handed alpha
Helix 40
AE4
B
372 391Right-handed alpha
Helix 41
AE5
B
394 401Right-handed alpha
Helix 42
AE6
B
404 425Right-handed alpha
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There are 5 sheets in PDB entry 5IJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 379anti-parallel
Strand 3
A
315 321anti-parallel
Strand 4
A
351 356parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
90 92first strand
Strand 2
B
63 67parallel
Strand 3
B
2 8parallel
Strand 4
B
129 138parallel
Strand 5
B
163 169parallel
Strand 6
B
198 202parallel
Strand 7
B
265 271parallel
Strand 8
B
364 370anti-parallel
Strand 9
B
312 318anti-parallel
Strand 10
B
349 354parallel
Strand 11
B
244 245anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
51 53first strand
Strand 2
B
59 61anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il