Analysis of interatomic Contacts of Structural Units in PDB entry:
5IJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IJ6 entry

There is 1 chain in PDB entry 5IJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ASP 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5IJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 24Right-handed alpha
Helix 2
AA2
A
48 53Right-handed alpha
Helix 3
AA3
A
54 62Right-handed alpha
Helix 4
AA4
A
97 112Right-handed alpha
Helix 5
AA5
A
155 163Right-handed alpha
Helix 6
AA6
A
185 189Right-handed 310
Helix 7
AA7
A
190 194Right-handed 310
Helix 8
AA8
A
197 210Right-handed alpha
Helix 9
AA9
A
214 222Right-handed 310
Helix 10
AB1
A
226 240Right-handed alpha
Helix 11
AB2
A
243 249Right-handed alpha
Helix 12
AB3
A
293 301Right-handed alpha
Helix 13
AB4
A
306 314Right-handed alpha
Helix 14
AB5
A
318 323Right-handed alpha
Helix 15
AB6
A
327 337Right-handed alpha
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There are 3 sheets in PDB entry 5IJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
31 35parallel
Strand 3
A
81 89anti-parallel
Strand 4
A
143 151anti-parallel
Strand 5
A
130 140anti-parallel
Strand 6
A
124 127anti-parallel
Strand 7
A
118 120anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
40 43parallel
Strand 3
A
75 77anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 262first strand
Strand 2
A
265 274anti-parallel
Strand 3
A
277 285anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il