Analysis of interatomic Contacts of Structural Units in PDB entry:
5IJD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IJD entry

There are 4 chains in PDB entry 5IJD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 29	PRO 618
C	LYS 20	ARG 156
D	LYS 20	ARG 156
B	PRO 27	PRO 618

There are 18 helices in PDB entry 5IJD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	168	172	Right-handed 310
Helix 2	AA2	A	194	199	Right-handed alpha
Helix 3	AA3	A	238	248	Right-handed alpha
Helix 4	AA4	A	272	277	Right-handed 310
Helix 5	AA5	A	296	306	Right-handed 310
Helix 6	AA6	A	390	395	Right-handed alpha
Helix 7	AA7	A	461	466	Right-handed 310
Helix 8	AA8	A	585	595	Right-handed alpha
Helix 9	AA9	A	611	615	Right-handed 310
Helix 10	AB1	C	102	107	Right-handed 310
Helix 11	AB2	D	102	107	Right-handed 310
Helix 12	AB3	B	167	172	Right-handed 310
Helix 13	AB4	B	238	248	Right-handed alpha
Helix 14	AB5	B	272	277	Right-handed 310
Helix 15	AB6	B	297	302	Right-handed alpha
Helix 16	AB7	B	303	306	Right-handed 310
Helix 17	AB8	B	390	395	Right-handed alpha
Helix 18	AB9	B	585	596	Right-handed alpha

There are 18 sheets in PDB entry 5IJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 25 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	36	38	anti-parallel
Strand 3	A	57	59	parallel
Strand 4	A	81	83	parallel
Strand 5	A	105	107	parallel
Strand 6	A	129	131	parallel
Strand 7	A	153	155	parallel
Strand 8	A	178	180	parallel
Strand 9	A	207	208	parallel
Strand 10	A	226	233	parallel
Strand 11	A	253	260	parallel
Strand 12	A	283	289	parallel
Strand 13	A	310	314	parallel
Strand 14	A	332	336	parallel
Strand 15	A	353	357	parallel
Strand 16	A	375	377	parallel
Strand 17	A	401	403	parallel
Strand 18	A	424	426	parallel
Strand 19	A	449	451	parallel
Strand 20	A	473	475	parallel
Strand 21	A	498	500	parallel
Strand 22	A	522	524	parallel
Strand 23	A	546	548	parallel
Strand 24	A	570	572	parallel
Strand 25	A	599	600	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	91	92	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	216	217	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	388	first strand
Strand 2	A	409	412	parallel
Strand 3	A	431	433	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	480	481	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	486	first strand
Strand 2	A	508	509	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	26	first strand
Strand 2	C	30	36	anti-parallel
Strand 3	C	144	155	anti-parallel
Strand 4	C	129	139	anti-parallel
Strand 5	C	74	82	anti-parallel
Strand 6	C	85	86	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	26	first strand
Strand 2	C	30	36	anti-parallel
Strand 3	C	144	155	anti-parallel
Strand 4	C	129	139	anti-parallel
Strand 5	C	74	82	anti-parallel
Strand 6	C	90	93	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	49	first strand
Strand 2	C	56	65	anti-parallel
Strand 3	C	113	122	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	26	first strand
Strand 2	D	31	36	anti-parallel
Strand 3	D	145	155	anti-parallel
Strand 4	D	129	139	anti-parallel
Strand 5	D	74	82	anti-parallel
Strand 6	D	85	86	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	26	first strand
Strand 2	D	31	36	anti-parallel
Strand 3	D	145	155	anti-parallel
Strand 4	D	129	139	anti-parallel
Strand 5	D	74	82	anti-parallel
Strand 6	D	90	93	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	56	65	anti-parallel
Strand 3	D	113	122	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	81	83	parallel
Strand 3	B	105	107	parallel
Strand 4	B	129	131	parallel
Strand 5	B	153	155	parallel
Strand 6	B	178	180	parallel
Strand 7	B	205	208	parallel
Strand 8	B	226	233	parallel
Strand 9	B	253	260	parallel
Strand 10	B	283	289	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	216	217	parallel

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There are 13 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	314	first strand
Strand 2	B	332	336	parallel
Strand 3	B	353	357	parallel
Strand 4	B	375	377	parallel
Strand 5	B	401	403	parallel
Strand 6	B	424	426	parallel
Strand 7	B	449	451	parallel
Strand 8	B	473	475	parallel
Strand 9	B	498	500	parallel
Strand 10	B	522	524	parallel
Strand 11	B	546	548	parallel
Strand 12	B	570	572	parallel
Strand 13	B	599	600	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	388	first strand
Strand 2	B	409	412	parallel
Strand 3	B	431	433	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	459	first strand
Strand 2	B	480	481	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	486	first strand
Strand 2	B	508	509	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IJD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IJD