Analysis of interatomic Contacts of Structural Units in PDB entry:
5IJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IJL entry

There is 1 chain in PDB entry 5IJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4ASP 1034
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5IJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 30Right-handed alpha
Helix 2
AA2
A
46 56Right-handed alpha
Helix 3
AA3
A
59 72Right-handed alpha
Helix 4
AA4
A
72 86Right-handed alpha
Helix 5
AA5
A
94 111Right-handed alpha
Helix 6
AA6
A
145 149Right-handed 310
Helix 7
AA7
A
150 169Right-handed alpha
Helix 8
AA8
A
177 195Right-handed alpha
Helix 9
AA9
A
203 214Right-handed alpha
Helix 10
AB1
A
242 252Right-handed alpha
Helix 11
AB2
A
256 268Right-handed alpha
Helix 12
AB3
A
272 284Right-handed alpha
Helix 13
AB4
A
311 323Right-handed alpha
Helix 14
AB5
A
368 375Right-handed alpha
Helix 15
AB6
A
419 427Right-handed alpha
Helix 16
AB7
A
459 476Right-handed alpha
Helix 17
AB8
A
486 498Right-handed alpha
Helix 18
AB9
A
500 510Right-handed alpha
Helix 19
AC1
A
517 529Right-handed alpha
Helix 20
AC2
A
533 537Right-handed 310
Helix 21
AC3
A
539 543Right-handed 310
Helix 22
AC4
A
544 559Right-handed alpha
Helix 23
AC5
A
579 583Right-handed alpha
Helix 24
AC6
A
584 592Right-handed alpha
Helix 25
AC7
A
608 615Right-handed alpha
Helix 26
AC8
A
617 621Right-handed 310
Helix 27
AC9
A
631 640Right-handed alpha
Helix 28
AD1
A
681 685Right-handed 310
Helix 29
AD2
A
686 693Right-handed alpha
Helix 30
AD3
A
740 746Right-handed alpha
Helix 31
AD4
A
766 779Right-handed alpha
Helix 32
AD5
A
801 812Right-handed alpha
Helix 33
AD6
A
834 839Right-handed 310
Helix 34
AD7
A
841 848Right-handed alpha
Helix 35
AD8
A
877 897Right-handed alpha
Helix 36
AD9
A
908 913Right-handed 310
Helix 37
AE1
A
965 972Right-handed alpha
Helix 38
AE2
A
973 977Right-handed 310
Helix 39
AE3
A
1009 1016Right-handed alpha
Helix 40
AE4
A
1017 1019Right-handed 310
Helix 41
AE5
A
1021 1033Right-handed alpha
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There are 9 sheets in PDB entry 5IJL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
990 992parallel
Strand 3
A
926 936parallel
Strand 4
A
916 920anti-parallel
Strand 5
A
959 964anti-parallel
Strand 6
A
823 829anti-parallel
Strand 7
A
941 943parallel
Strand 8
A
872 876anti-parallel
Strand 9
A
926 936parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 129first strand
Strand 2
A
137 143anti-parallel
Strand 3
A
217 219parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
240 241anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 398first strand
Strand 2
A
366 367parallel
Strand 3
A
438 442anti-parallel
Strand 4
A
350 355parallel
Strand 5
A
651 652anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
406 409anti-parallel
Strand 3
A
430 435anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 566first strand
Strand 2
A
569 578anti-parallel
Strand 3
A
602 606anti-parallel
Strand 4
A
597 599anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 701first strand
Strand 2
A
761 765anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 713first strand
Strand 2
A
704 705anti-parallel
Strand 3
A
726 730anti-parallel
Strand 4
A
737 739anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
832 833first strand
Strand 2
A
866 867anti-parallel
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