Analysis of interatomic Contacts of Structural Units in PDB entry:
5IJT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IJT entry

There are 10 chains in PDB entry 5IJT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 4	THR 165
B	GLY 4	GLY 179
C	SER 3	TYR 164
D	GLY 4	TYR 164
E	GLY 4	ASP 181
F	GLY 4	SER 180
G	GLY 4	GLU 167
H	GLY 4	CYS 172
I	GLY 4	GLY 179
J	GLY 4	GLY 179

There are 66 helices in PDB entry 5IJT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	34	Right-handed 310
Helix 2	AA2	A	52	61	Right-handed alpha
Helix 3	AA3	A	61	68	Right-handed alpha
Helix 4	AA4	A	79	89	Right-handed alpha
Helix 5	AA5	A	90	94	Right-handed 310
Helix 6	AA6	A	109	115	Right-handed alpha
Helix 7	AA7	A	150	165	Right-handed alpha
Helix 8	AA8	B	31	34	Right-handed 310
Helix 9	AA9	B	52	61	Right-handed alpha
Helix 10	AB1	B	61	68	Right-handed alpha
Helix 11	AB2	B	79	89	Right-handed alpha
Helix 12	AB3	B	90	94	Right-handed 310
Helix 13	AB4	B	109	115	Right-handed alpha
Helix 14	AB5	B	151	164	Right-handed alpha
Helix 15	AB6	C	31	34	Right-handed 310
Helix 16	AB7	C	52	61	Right-handed alpha
Helix 17	AB8	C	61	68	Right-handed alpha
Helix 18	AB9	C	79	89	Right-handed alpha
Helix 19	AC1	C	109	115	Right-handed alpha
Helix 20	AC2	C	152	162	Right-handed alpha
Helix 21	AC3	D	31	34	Right-handed 310
Helix 22	AC4	D	52	61	Right-handed alpha
Helix 23	AC5	D	61	68	Right-handed alpha
Helix 24	AC6	D	79	89	Right-handed alpha
Helix 25	AC7	D	109	115	Right-handed alpha
Helix 26	AC8	D	152	162	Right-handed alpha
Helix 27	AC9	E	31	34	Right-handed 310
Helix 28	AD1	E	52	61	Right-handed alpha
Helix 29	AD2	E	61	68	Right-handed alpha
Helix 30	AD3	E	79	89	Right-handed alpha
Helix 31	AD4	E	90	94	Right-handed 310
Helix 32	AD5	E	109	115	Right-handed alpha
Helix 33	AD6	E	149	168	Right-handed alpha
Helix 34	AD7	F	31	34	Right-handed 310
Helix 35	AD8	F	52	61	Right-handed alpha
Helix 36	AD9	F	61	68	Right-handed alpha
Helix 37	AE1	F	79	88	Right-handed alpha
Helix 38	AE2	F	109	115	Right-handed alpha
Helix 39	AE3	F	149	169	Right-handed alpha
Helix 40	AE4	G	31	34	Right-handed 310
Helix 41	AE5	G	54	61	Right-handed alpha
Helix 42	AE6	G	61	68	Right-handed alpha
Helix 43	AE7	G	79	89	Right-handed alpha
Helix 44	AE8	G	90	94	Right-handed 310
Helix 45	AE9	G	109	115	Right-handed alpha
Helix 46	AF1	G	152	167	Right-handed alpha
Helix 47	AF2	H	31	34	Right-handed 310
Helix 48	AF3	H	52	61	Right-handed alpha
Helix 49	AF4	H	61	68	Right-handed alpha
Helix 50	AF5	H	79	89	Right-handed alpha
Helix 51	AF6	H	109	115	Right-handed alpha
Helix 52	AF7	H	152	169	Right-handed alpha
Helix 53	AF8	I	31	34	Right-handed 310
Helix 54	AF9	I	52	61	Right-handed alpha
Helix 55	AG1	I	61	67	Right-handed alpha
Helix 56	AG2	I	79	88	Right-handed alpha
Helix 57	AG3	I	90	94	Right-handed 310
Helix 58	AG4	I	109	115	Right-handed alpha
Helix 59	AG5	I	152	162	Right-handed alpha
Helix 60	AG6	I	163	168	Right-handed alpha
Helix 61	AG7	J	31	34	Right-handed 310
Helix 62	AG8	J	52	68	Right-handed alpha
Helix 63	AG9	J	79	88	Right-handed alpha
Helix 64	AH1	J	90	94	Right-handed 310
Helix 65	AH2	J	109	115	Right-handed alpha
Helix 66	AH3	J	150	166	Right-handed alpha

There are 7 sheets in PDB entry 5IJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	29	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	103	105	anti-parallel
Strand 4	A	70	76	parallel
Strand 5	A	37	42	parallel
Strand 6	A	127	132	anti-parallel
Strand 7	A	138	144	anti-parallel
Strand 8	B	138	144	anti-parallel
Strand 9	B	127	132	anti-parallel
Strand 10	B	37	42	anti-parallel
Strand 11	B	70	76	parallel
Strand 12	B	103	105	parallel
Strand 13	B	16	21	anti-parallel
Strand 14	B	24	29	anti-parallel

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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	29	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	103	105	anti-parallel
Strand 4	C	70	76	parallel
Strand 5	C	37	42	parallel
Strand 6	C	128	132	anti-parallel
Strand 7	C	138	143	anti-parallel
Strand 8	D	138	144	anti-parallel
Strand 9	D	127	132	anti-parallel
Strand 10	D	37	42	anti-parallel
Strand 11	D	70	76	parallel
Strand 12	D	103	105	parallel
Strand 13	D	16	21	anti-parallel
Strand 14	D	24	29	anti-parallel

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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	29	first strand
Strand 2	E	16	21	anti-parallel
Strand 3	E	103	105	anti-parallel
Strand 4	E	70	76	parallel
Strand 5	E	37	42	parallel
Strand 6	E	127	132	anti-parallel
Strand 7	E	138	144	anti-parallel
Strand 8	F	138	144	anti-parallel
Strand 9	F	127	132	anti-parallel
Strand 10	F	37	42	anti-parallel
Strand 11	F	70	76	parallel
Strand 12	F	103	105	parallel
Strand 13	F	16	21	anti-parallel
Strand 14	F	24	29	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	24	29	first strand
Strand 2	G	16	21	anti-parallel
Strand 3	G	103	105	anti-parallel
Strand 4	G	70	76	parallel
Strand 5	G	37	42	parallel
Strand 6	G	127	132	anti-parallel
Strand 7	G	138	144	anti-parallel
Strand 8	H	138	144	anti-parallel
Strand 9	H	127	132	anti-parallel
Strand 10	H	37	42	anti-parallel
Strand 11	H	70	76	parallel
Strand 12	H	103	105	parallel
Strand 13	H	16	21	anti-parallel
Strand 14	H	24	29	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	119	first strand
Strand 2	H	124	125	anti-parallel

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There are 14 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	24	29	first strand
Strand 2	I	16	21	anti-parallel
Strand 3	I	103	105	anti-parallel
Strand 4	I	70	76	parallel
Strand 5	I	37	42	parallel
Strand 6	I	127	132	anti-parallel
Strand 7	I	138	144	anti-parallel
Strand 8	J	138	144	anti-parallel
Strand 9	J	127	132	anti-parallel
Strand 10	J	37	42	anti-parallel
Strand 11	J	70	76	parallel
Strand 12	J	103	105	parallel
Strand 13	J	16	21	anti-parallel
Strand 14	J	24	29	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	118	119	first strand
Strand 2	J	124	125	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IJT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IJT