Analysis of interatomic Contacts of Structural Units in PDB entry:
5IJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IJW entry

There are 2 chains in PDB entry 5IJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1ARG 270
B
 SER -1ARG 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5IJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 28Right-handed alpha
Helix 2
AA2
A
48 66Right-handed alpha
Helix 3
AA3
A
75 83Right-handed alpha
Helix 4
AA4
A
85 91Right-handed alpha
Helix 5
AA5
A
99 110Right-handed alpha
Helix 6
AA6
A
120 126Right-handed alpha
Helix 7
AA7
A
127 133Right-handed alpha
Helix 8
AA8
A
134 136Right-handed 310
Helix 9
AA9
A
148 155Right-handed alpha
Helix 10
AB1
A
160 177Right-handed alpha
Helix 11
AB2
A
188 191Right-handed 310
Helix 12
AB3
A
192 201Right-handed alpha
Helix 13
AB4
A
209 224Right-handed alpha
Helix 14
AB5
A
247 260Right-handed alpha
Helix 15
AB6
B
0 6Right-handed alpha
Helix 16
AB7
B
17 28Right-handed alpha
Helix 17
AB8
B
48 67Right-handed alpha
Helix 18
AB9
B
75 83Right-handed alpha
Helix 19
AC1
B
85 91Right-handed alpha
Helix 20
AC2
B
99 110Right-handed alpha
Helix 21
AC3
B
120 126Right-handed alpha
Helix 22
AC4
B
127 135Right-handed alpha
Helix 23
AC5
B
148 156Right-handed alpha
Helix 24
AC6
B
160 177Right-handed alpha
Helix 25
AC7
B
188 191Right-handed 310
Helix 26
AC8
B
192 201Right-handed alpha
Helix 27
AC9
B
209 224Right-handed alpha
Helix 28
AD1
B
247 256Right-handed alpha
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There are 4 sheets in PDB entry 5IJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
70 73parallel
Strand 3
A
8 12parallel
Strand 4
A
33 37parallel
Strand 5
A
240 244parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 145first strand
Strand 2
A
114 119parallel
Strand 3
A
181 185parallel
Strand 4
A
205 208parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 97first strand
Strand 2
B
70 73parallel
Strand 3
B
8 12parallel
Strand 4
B
33 37parallel
Strand 5
B
240 244parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 145first strand
Strand 2
B
114 119parallel
Strand 3
B
181 185parallel
Strand 4
B
205 208parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il