Analysis of interatomic Contacts of Structural Units in PDB entry:
5IKK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IKK entry

There is 1 chain in PDB entry 5IKK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 54GLN 680
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5IKK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 69Right-handed alpha
Helix 2
AA2
A
81 94Right-handed alpha
Helix 3
AA3
A
116 130Right-handed alpha
Helix 4
AA4
A
139 143Right-handed 310
Helix 5
AA5
A
145 152Right-handed alpha
Helix 6
AA6
A
159 179Right-handed alpha
Helix 7
AA7
A
208 221Right-handed alpha
Helix 8
AA8
A
238 246Right-handed alpha
Helix 9
AA9
A
268 272Right-handed 310
Helix 10
AB1
A
278 282Right-handed 310
Helix 11
AB2
A
296 307Right-handed alpha
Helix 12
AB3
A
307 316Right-handed alpha
Helix 13
AB4
A
340 352Right-handed alpha
Helix 14
AB5
A
353 357Right-handed 310
Helix 15
AB6
A
368 384Right-handed alpha
Helix 16
AB7
A
397 412Right-handed alpha
Helix 17
AB8
A
434 452Right-handed alpha
Helix 18
AB9
A
476 480Right-handed 310
Helix 19
AC1
A
514 525Right-handed alpha
Helix 20
AC2
A
548 563Right-handed alpha
Helix 21
AC3
A
579 591Right-handed alpha
Helix 22
AC4
A
618 627Right-handed alpha
Helix 23
AC5
A
636 640Right-handed 310
Helix 24
AC6
A
646 650Right-handed 310
Helix 25
AC7
A
659 667Right-handed alpha
Helix 26
AC8
A
667 679Right-handed alpha
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There are 3 sheets in PDB entry 5IKK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
57 61parallel
Strand 3
A
184 188parallel
Strand 4
A
359 363parallel
Strand 5
A
319 324parallel
Strand 6
A
228 232parallel
Strand 7
A
251 258parallel
Strand 8
A
285 290parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 455first strand
Strand 2
A
471 473anti-parallel
Strand 3
A
528 533anti-parallel
Strand 4
A
482 488parallel
Strand 5
A
571 577parallel
Strand 6
A
597 603parallel
Strand 7
A
628 632parallel
Strand 8
A
652 654parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 494first strand
Strand 2
A
510 512anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il