Analysis of interatomic Contacts of Structural Units in PDB entry:
5IKU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IKU entry

There is 1 chain in PDB entry 5IKU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 769LYS 1008
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 5IKU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
786 790Right-handed 310
Helix 2
AA2
A
905 909Right-handed 310
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There are 4 sheets in PDB entry 5IKU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
800 805first strand
Strand 2
A
882 890anti-parallel
Strand 3
A
821 831anti-parallel
Strand 4
A
858 865anti-parallel
Strand 5
A
853 855anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
810 817first strand
Strand 2
A
868 876anti-parallel
Strand 3
A
835 841anti-parallel
Strand 4
A
850 851anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 898first strand
Strand 2
A
917 923parallel
Strand 3
A
1000 1007anti-parallel
Strand 4
A
940 948anti-parallel
Strand 5
A
977 984anti-parallel
Strand 6
A
972 974anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
910 911first strand
Strand 2
A
929 936parallel
Strand 3
A
987 997anti-parallel
Strand 4
A
953 960anti-parallel
Strand 5
A
969 970anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il