Analysis of interatomic Contacts of Structural Units in PDB entry:
5IKX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IKX entry

There are 2 chains in PDB entry 5IKX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2PHE 570
B
 ASN 2PHE 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 5IKX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 27Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
152 156Right-handed 310
Helix 4
AA4
A
167 173Right-handed alpha
Helix 5
AA5
A
185 202Right-handed alpha
Helix 6
AA6
A
203 205Right-handed 310
Helix 7
AA7
A
218 230Right-handed alpha
Helix 8
AA8
A
231 234Right-handed 310
Helix 9
AA9
A
258 267Right-handed alpha
Helix 10
AB1
A
274 285Right-handed alpha
Helix 11
AB2
A
286 294Right-handed alpha
Helix 12
AB3
A
295 297Right-handed 310
Helix 13
AB4
A
299 305Right-handed alpha
Helix 14
AB5
A
328 334Right-handed alpha
Helix 15
AB6
A
336 341Right-handed 310
Helix 16
AB7
A
350 354Right-handed 310
Helix 17
AB8
A
355 362Right-handed alpha
Helix 18
AB9
A
363 371Right-handed 310
Helix 19
AC1
A
372 376Right-handed 310
Helix 20
AC2
A
387 402Right-handed alpha
Helix 21
AC3
A
408 421Right-handed alpha
Helix 22
AC4
A
421 435Right-handed alpha
Helix 23
AC5
A
455 461Right-handed alpha
Helix 24
AC6
A
472 478Right-handed 310
Helix 25
AC7
A
491 511Right-handed alpha
Helix 26
AC8
A
552 561Right-handed alpha
Helix 27
AC9
A
562 564Right-handed 310
Helix 28
AD1
A
566 570Right-handed 310
Helix 29
AD2
B
6 27Right-handed alpha
Helix 30
AD3
B
68 72Right-handed 310
Helix 31
AD4
B
152 156Right-handed 310
Helix 32
AD5
B
167 173Right-handed alpha
Helix 33
AD6
B
177 181Right-handed 310
Helix 34
AD7
B
185 202Right-handed alpha
Helix 35
AD8
B
203 205Right-handed 310
Helix 36
AD9
B
218 230Right-handed alpha
Helix 37
AE1
B
231 234Right-handed 310
Helix 38
AE2
B
249 253Right-handed 310
Helix 39
AE3
B
258 267Right-handed alpha
Helix 40
AE4
B
274 283Right-handed alpha
Helix 41
AE5
B
286 294Right-handed alpha
Helix 42
AE6
B
295 297Right-handed 310
Helix 43
AE7
B
299 305Right-handed alpha
Helix 44
AE8
B
328 334Right-handed alpha
Helix 45
AE9
B
335 341Right-handed 310
Helix 46
AF1
B
350 354Right-handed 310
Helix 47
AF2
B
355 362Right-handed alpha
Helix 48
AF3
B
363 370Right-handed 310
Helix 49
AF4
B
372 376Right-handed 310
Helix 50
AF5
B
387 402Right-handed alpha
Helix 51
AF6
B
408 421Right-handed alpha
Helix 52
AF7
B
421 436Right-handed alpha
Helix 53
AF8
B
456 461Right-handed alpha
Helix 54
AF9
B
472 478Right-handed 310
Helix 55
AG1
B
491 511Right-handed alpha
Helix 56
AG2
B
552 562Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5IKX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 35first strand
Strand 2
A
41 48anti-parallel
Strand 3
A
85 87parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 35first strand
Strand 2
A
41 48anti-parallel
Strand 3
A
54 62anti-parallel
Strand 4
A
113 118anti-parallel
Strand 5
A
159 163anti-parallel
Strand 6
A
127 133parallel
Strand 7
A
207 217parallel
Strand 8
A
239 243parallel
Strand 9
A
343 348parallel
Strand 10
A
442 446parallel
Strand 11
A
537 541parallel
Strand 12
A
545 549anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
105 106anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 35first strand
Strand 2
B
41 48anti-parallel
Strand 3
B
85 87parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 35first strand
Strand 2
B
41 48anti-parallel
Strand 3
B
54 62anti-parallel
Strand 4
B
113 118anti-parallel
Strand 5
B
159 163anti-parallel
Strand 6
B
127 133parallel
Strand 7
B
207 217parallel
Strand 8
B
239 243parallel
Strand 9
B
343 348parallel
Strand 10
B
441 446parallel
Strand 11
B
537 541parallel
Strand 12
B
545 549anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
105 106anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il