Analysis of interatomic Contacts of Structural Units in PDB entry:
5IKY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IKY entry

There is 1 chain in PDB entry 5IKY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2GLN 1106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5IKY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 34Right-handed alpha
Helix 2
AA2
A
36 50Right-handed alpha
Helix 3
AA3
A
73 75Right-handed 310
Helix 4
AA4
A
81 91Right-handed alpha
Helix 5
AA5
A
116 122Right-handed alpha
Helix 6
AA6
A
125 139Right-handed alpha
Helix 7
AA7
A
161 173Right-handed alpha
Helix 8
AA8
A
175 182Right-handed alpha
Helix 9
AA9
A
205 219Right-handed alpha
Helix 10
AB1
A
256 271Right-handed alpha
Helix 11
AB2
A
285 289Right-handed 310
Helix 12
AB3
A
292 297Right-handed alpha
Helix 13
AB4
A
329 344Right-handed alpha
Helix 14
AB5
A
353 361Right-handed alpha
Helix 15
AB6
A
364 371Right-handed alpha
Helix 16
AB7
A
402 416Right-handed alpha
Helix 17
AB8
A
417 443Right-handed alpha
Helix 18
AB9
A
453 458Right-handed 310
Helix 19
AC1
A
459 467Right-handed alpha
Helix 20
AC2
A
496 511Right-handed alpha
Helix 21
AC3
A
517 525Right-handed alpha
Helix 22
AC4
A
529 542Right-handed alpha
Helix 23
AC5
A
553 561Right-handed alpha
Helix 24
AC6
A
561 580Right-handed alpha
Helix 25
AC7
A
591 603Right-handed alpha
Helix 26
AC8
A
610 617Right-handed 310
Helix 27
AC9
A
628 642Right-handed alpha
Helix 28
AD1
A
652 657Right-handed 310
Helix 29
AD2
A
675 679Right-handed 310
Helix 30
AD3
A
681 691Right-handed alpha
Helix 31
AD4
A
707 712Right-handed 310
Helix 32
AD5
A
714 735Right-handed alpha
Helix 33
AD6
A
772 778Right-handed alpha
Helix 34
AD7
A
791 814Right-handed alpha
Helix 35
AD8
A
848 861Right-handed alpha
Helix 36
AD9
A
869 880Right-handed alpha
Helix 37
AE1
A
881 885Right-handed 310
Helix 38
AE2
A
919 923Right-handed 310
Helix 39
AE3
A
936 956Right-handed alpha
Helix 40
AE4
A
958 967Right-handed alpha
Helix 41
AE5
A
997 1003Right-handed alpha
Helix 42
AE6
A
1006 1010Right-handed 310
Helix 43
AE7
A
1014 1026Right-handed alpha
Helix 44
AE8
A
1028 1032Right-handed 310
Helix 45
AE9
A
1070 1077Right-handed alpha
Helix 46
AF1
A
1079 1091Right-handed alpha
Helix 47
AF2
A
1096 1104Right-handed alpha
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There are 12 sheets in PDB entry 5IKY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 515first strand
Strand 2
A
4 9parallel
Strand 3
A
471 474parallel
Strand 4
A
446 451parallel
Strand 5
A
375 380parallel
Strand 6
A
346 351parallel
Strand 7
A
310 313parallel
Strand 8
A
275 278parallel
Strand 9
A
223 226parallel
Strand 10
A
4 9parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
198 199parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
190 192anti-parallel
Strand 3
A
53 55anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 160first strand
Strand 2
A
60 64anti-parallel
Strand 3
A
185 186anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
99 102anti-parallel
Strand 3
A
93 96anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
149 150anti-parallel
Strand 3
A
142 143anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
246 248anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
325 326anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
395 397anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 483first strand
Strand 2
A
491 493anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 697first strand
Strand 2
A
704 705anti-parallel
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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 766first strand
Strand 2
A
747 752anti-parallel
Strand 3
A
832 836anti-parallel
Strand 4
A
780 782parallel
Strand 5
A
929 935parallel
Strand 6
A
969 976parallel
Strand 7
A
988 992parallel
Strand 8
A
1049 1054parallel
Strand 9
A
1038 1043anti-parallel
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