Analysis of interatomic Contacts of Structural Units in PDB entry:
5IM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IM2 entry

There is 1 chain in PDB entry 5IM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 26ALA 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5IM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 45Right-handed alpha
Helix 2
AA2
A
45 57Right-handed alpha
Helix 3
AA3
A
74 76Right-handed 310
Helix 4
AA4
A
77 84Right-handed alpha
Helix 5
AA5
A
93 97Right-handed 310
Helix 6
AA6
A
102 109Right-handed 310
Helix 7
AA7
A
115 131Right-handed alpha
Helix 8
AA8
A
132 136Right-handed 310
Helix 9
AA9
A
160 165Right-handed 310
Helix 10
AB1
A
173 184Right-handed alpha
Helix 11
AB2
A
191 193Right-handed 310
Helix 12
AB3
A
194 202Right-handed alpha
Helix 13
AB4
A
212 217Right-handed 310
Helix 14
AB5
A
218 223Right-handed alpha
Helix 15
AB6
A
231 234Right-handed 310
Helix 16
AB7
A
246 252Right-handed alpha
Helix 17
AB8
A
254 264Right-handed alpha
Helix 18
AB9
A
266 280Right-handed alpha
Helix 19
AC1
A
280 291Right-handed alpha
Helix 20
AC2
A
299 311Right-handed alpha
Helix 21
AC3
A
311 324Right-handed alpha
Helix 22
AC4
A
327 346Right-handed alpha
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There are 2 sheets in PDB entry 5IM2. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
27 32parallel
Strand 3
A
89 92parallel
Strand 4
A
240 245anti-parallel
Strand 5
A
139 145anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
168 171parallel
Strand 3
A
206 210parallel
Strand 4
A
149 153anti-parallel
Strand 5
A
225 229anti-parallel
Strand 6
A
294 298parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il