Analysis of interatomic Contacts of Structural Units in PDB entry:
5IM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IM3 entry

There are 2 chains in PDB entry 5IM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 32	THR 912
B	GLY 30	ASP 435

There are 80 helices in PDB entry 5IM3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	61	Right-handed alpha
Helix 2	AA2	A	68	89	Right-handed alpha
Helix 3	AA3	A	98	112	Right-handed alpha
Helix 4	AA4	A	114	139	Right-handed alpha
Helix 5	AA5	A	161	174	Right-handed alpha
Helix 6	AA6	A	180	191	Right-handed alpha
Helix 7	AA7	A	197	211	Right-handed alpha
Helix 8	AA8	A	218	240	Right-handed alpha
Helix 9	AA9	A	249	268	Right-handed alpha
Helix 10	AB1	A	272	278	Right-handed 310
Helix 11	AB2	A	279	287	Right-handed alpha
Helix 12	AB3	A	288	295	Right-handed 310
Helix 13	AB4	A	296	307	Right-handed alpha
Helix 14	AB5	A	318	331	Right-handed alpha
Helix 15	AB6	A	336	350	Right-handed alpha
Helix 16	AB7	A	356	363	Right-handed alpha
Helix 17	AB8	A	381	396	Right-handed alpha
Helix 18	AB9	A	426	441	Right-handed alpha
Helix 19	AC1	A	460	466	Right-handed alpha
Helix 20	AC2	A	473	477	Right-handed 310
Helix 21	AC3	A	488	497	Right-handed alpha
Helix 22	AC4	A	516	533	Right-handed alpha
Helix 23	AC5	A	544	559	Right-handed alpha
Helix 24	AC6	A	566	572	Right-handed alpha
Helix 25	AC7	A	610	613	Right-handed 310
Helix 26	AC8	A	619	641	Right-handed alpha
Helix 27	AC9	A	645	656	Right-handed alpha
Helix 28	AD1	A	664	672	Right-handed alpha
Helix 29	AD2	A	678	708	Right-handed alpha
Helix 30	AD3	A	710	714	Right-handed 310
Helix 31	AD4	A	723	736	Right-handed alpha
Helix 32	AD5	A	750	758	Right-handed alpha
Helix 33	AD6	A	772	780	Right-handed alpha
Helix 34	AD7	A	806	816	Right-handed alpha
Helix 35	AD8	A	820	830	Right-handed alpha
Helix 36	AD9	A	841	848	Right-handed alpha
Helix 37	AE1	A	850	854	Right-handed 310
Helix 38	AE2	A	855	867	Right-handed alpha
Helix 39	AE3	A	884	898	Right-handed alpha
Helix 40	AE4	B	45	61	Right-handed alpha
Helix 41	AE5	B	66	69	Right-handed 310
Helix 42	AE6	B	70	90	Right-handed alpha
Helix 43	AE7	B	98	112	Right-handed alpha
Helix 44	AE8	B	114	135	Right-handed alpha
Helix 45	AE9	B	161	173	Right-handed alpha
Helix 46	AF1	B	180	190	Right-handed alpha
Helix 47	AF2	B	198	212	Right-handed alpha
Helix 48	AF3	B	213	215	Right-handed 310
Helix 49	AF4	B	216	217	Right-handed 310
Helix 50	AF5	B	218	240	Right-handed alpha
Helix 51	AF6	B	249	268	Right-handed alpha
Helix 52	AF7	B	272	278	Right-handed 310
Helix 53	AF8	B	279	287	Right-handed alpha
Helix 54	AF9	B	288	295	Right-handed 310
Helix 55	AG1	B	296	307	Right-handed alpha
Helix 56	AG2	B	318	331	Right-handed alpha
Helix 57	AG3	B	336	350	Right-handed alpha
Helix 58	AG4	B	356	363	Right-handed alpha
Helix 59	AG5	B	381	396	Right-handed alpha
Helix 60	AG6	B	426	441	Right-handed alpha
Helix 61	AG7	B	460	465	Right-handed alpha
Helix 62	AG8	B	473	477	Right-handed 310
Helix 63	AG9	B	488	498	Right-handed alpha
Helix 64	AH1	B	516	533	Right-handed alpha
Helix 65	AH2	B	544	559	Right-handed alpha
Helix 66	AH3	B	566	572	Right-handed alpha
Helix 67	AH4	B	619	641	Right-handed alpha
Helix 68	AH5	B	645	656	Right-handed alpha
Helix 69	AH6	B	664	672	Right-handed alpha
Helix 70	AH7	B	678	708	Right-handed alpha
Helix 71	AH8	B	723	736	Right-handed alpha
Helix 72	AH9	B	737	740	Right-handed 310
Helix 73	AI1	B	750	758	Right-handed alpha
Helix 74	AI2	B	772	780	Right-handed alpha
Helix 75	AI3	B	806	816	Right-handed alpha
Helix 76	AI4	B	820	830	Right-handed alpha
Helix 77	AI5	B	841	848	Right-handed alpha
Helix 78	AI6	B	850	854	Right-handed 310
Helix 79	AI7	B	855	870	Right-handed alpha
Helix 80	AI8	B	884	898	Right-handed alpha

There are 19 sheets in PDB entry 5IM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	33	35	anti-parallel
Strand 3	A	95	97	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	151	first strand
Strand 2	A	157	159	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	311	first strand
Strand 2	A	314	315	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	355	first strand
Strand 2	A	604	608	anti-parallel
Strand 3	A	659	663	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	565	first strand
Strand 2	A	482	487	parallel
Strand 3	A	450	455	parallel
Strand 4	A	401	405	parallel
Strand 5	A	373	377	parallel
Strand 6	A	600	601	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	416	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	504	first strand
Strand 2	A	539	543	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	792	795	first strand
Strand 2	A	802	805	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	881	first strand
Strand 2	A	906	909	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	32	35	anti-parallel
Strand 3	B	94	97	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	149	151	anti-parallel
Strand 3	B	196	197	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	311	first strand
Strand 2	B	314	315	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	355	first strand
Strand 2	B	604	608	anti-parallel
Strand 3	B	659	663	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	562	565	first strand
Strand 2	B	482	487	parallel
Strand 3	B	450	455	parallel
Strand 4	B	401	405	parallel
Strand 5	B	373	377	parallel
Strand 6	B	600	601	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	416	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	504	first strand
Strand 2	B	539	543	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	613	614	first strand
Strand 2	B	617	618	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	792	797	first strand
Strand 2	B	800	805	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	878	880	first strand
Strand 2	B	906	908	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IM3