Analysis of interatomic Contacts of Structural Units in PDB entry:
5IMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IMJ entry

There are 2 chains in PDB entry 5IMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2CYS 247
B
 GLN 2CYS 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5IMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 30Right-handed alpha
Helix 2
AA2
A
36 55Right-handed alpha
Helix 3
AA3
A
58 78Right-handed alpha
Helix 4
AA4
A
85 104Right-handed alpha
Helix 5
AA5
A
109 115Right-handed alpha
Helix 6
AA6
A
115 125Right-handed alpha
Helix 7
AA7
A
136 143Right-handed alpha
Helix 8
AA8
A
148 161Right-handed alpha
Helix 9
AA9
A
161 176Right-handed alpha
Helix 10
AB1
B
12 28Right-handed alpha
Helix 11
AB2
B
36 55Right-handed alpha
Helix 12
AB3
B
58 78Right-handed alpha
Helix 13
AB4
B
85 105Right-handed alpha
Helix 14
AB5
B
109 115Right-handed alpha
Helix 15
AB6
B
115 124Right-handed alpha
Helix 16
AB7
B
125 127Right-handed 310
Helix 17
AB8
B
136 145Right-handed alpha
Helix 18
AB9
B
149 160Right-handed alpha
Helix 19
AC1
B
161 177Right-handed alpha
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There are 4 sheets in PDB entry 5IMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
200 204anti-parallel
Strand 3
A
239 247anti-parallel
Strand 4
A
182 187anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 194first strand
Strand 2
A
221 228anti-parallel
Strand 3
A
211 218anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
200 205anti-parallel
Strand 3
B
243 245anti-parallel
Strand 4
B
182 183anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 194first strand
Strand 2
B
221 227anti-parallel
Strand 3
B
212 218anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il