Analysis of interatomic Contacts of Structural Units in PDB entry:
5IMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IMT entry

There are 2 chains in PDB entry 5IMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 56VAL 527
D
LEU 1ASN 77
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5IMT. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
58 70Right-handed alpha
Helix 2
AA2
A
137 142Right-handed alpha
Helix 3
AA3
A
177 196Right-handed alpha
Helix 4
AA4
A
215 224Right-handed alpha
Helix 5
AA5
A
226 231Right-handed alpha
Helix 6
AA6
A
232 235Right-handed 310
Helix 7
AA7
A
238 243Right-handed alpha
Helix 8
AA8
A
267 272Right-handed 310
Helix 9
AA9
A
277 284Right-handed alpha
Helix 10
AB1
A
316 325Right-handed alpha
Helix 11
AB2
A
366 375Right-handed alpha
Helix 12
AB3
D
41 45Right-handed 310
Helix 13
AB4
D
46 54Right-handed alpha
Helix 14
AB5
D
71 75Right-handed 310
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There are 8 sheets in PDB entry 5IMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
80 82first strand
Strand 2
A
402 417parallel
Strand 3
A
100 115anti-parallel
Strand 4
A
91 97anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
118 119first strand
Strand 2
A
385 393anti-parallel
Strand 3
A
292 310anti-parallel
Strand 4
A
247 261anti-parallel
Strand 5
A
205 212anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
205 212first strand
Strand 2
A
247 261anti-parallel
Strand 3
A
155 159anti-parallel
Strand 4
A
170 173anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
133 135first strand
Strand 2
A
292 310anti-parallel
Strand 3
A
344 351anti-parallel
Strand 4
A
359 361anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
466 472first strand
Strand 2
A
419 425anti-parallel
Strand 3
A
508 515parallel
Strand 4
A
520 526anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
461 462first strand
Strand 2
A
431 442anti-parallel
Strand 3
A
476 486anti-parallel
Strand 4
A
494 503anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
461 462first strand
Strand 2
A
431 442anti-parallel
Strand 3
A
448 454anti-parallel
Strand 4
D
60 64anti-parallel
Strand 5
D
25 31anti-parallel
Strand 6
D
34 40anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2 4first strand
Strand 2
D
16 18anti-parallel
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