Analysis of interatomic Contacts of Structural Units in PDB entry:
5IMY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IMY entry

There are 4 chains in PDB entry 5IMY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 42	ASN 515
C	MET 0	ASN 77
D	MET 0	ASN 77
B	CYS 44	ASN 515

There are 29 helices in PDB entry 5IMY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	57	Right-handed alpha
Helix 2	AA2	A	63	65	Right-handed 310
Helix 3	AA3	A	111	115	Right-handed 310
Helix 4	AA4	A	124	129	Right-handed alpha
Helix 5	AA5	A	164	184	Right-handed alpha
Helix 6	AA6	A	202	211	Right-handed alpha
Helix 7	AA7	A	213	218	Right-handed alpha
Helix 8	AA8	A	219	222	Right-handed 310
Helix 9	AA9	A	224	230	Right-handed alpha
Helix 10	AB1	A	265	270	Right-handed alpha
Helix 11	AB2	A	303	313	Right-handed alpha
Helix 12	AB3	A	323	328	Right-handed alpha
Helix 13	AB4	A	351	362	Right-handed alpha
Helix 14	AB5	C	41	45	Right-handed 310
Helix 15	AB6	C	46	55	Right-handed alpha
Helix 16	AB7	C	71	75	Right-handed 310
Helix 17	AB8	D	41	45	Right-handed 310
Helix 18	AB9	D	46	55	Right-handed alpha
Helix 19	AC1	D	71	75	Right-handed 310
Helix 20	AC2	B	108	113	Right-handed alpha
Helix 21	AC3	B	124	129	Right-handed alpha
Helix 22	AC4	B	164	183	Right-handed alpha
Helix 23	AC5	B	202	211	Right-handed alpha
Helix 24	AC6	B	213	218	Right-handed alpha
Helix 25	AC7	B	225	230	Right-handed alpha
Helix 26	AC8	B	264	269	Right-handed alpha
Helix 27	AC9	B	303	313	Right-handed alpha
Helix 28	AD1	B	321	328	Right-handed alpha
Helix 29	AD2	B	351	363	Right-handed alpha

There are 14 sheets in PDB entry 5IMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	69	first strand
Strand 2	A	389	403	parallel
Strand 3	A	88	102	anti-parallel
Strand 4	A	77	83	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	373	380	anti-parallel
Strand 3	A	279	297	anti-parallel
Strand 4	A	234	249	anti-parallel
Strand 5	A	192	199	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	199	first strand
Strand 2	A	234	249	anti-parallel
Strand 3	A	142	146	anti-parallel
Strand 4	A	157	160	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	279	297	anti-parallel
Strand 3	A	331	337	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	459	first strand
Strand 2	A	406	415	anti-parallel
Strand 3	A	495	503	parallel
Strand 4	A	506	511	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	490	first strand
Strand 2	A	464	469	anti-parallel
Strand 3	A	421	429	anti-parallel
Strand 4	A	435	441	anti-parallel
Strand 5	C	60	64	anti-parallel
Strand 6	C	25	31	anti-parallel
Strand 7	C	34	40	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	16	18	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	4	first strand
Strand 2	D	16	18	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	40	first strand
Strand 2	D	25	31	anti-parallel
Strand 3	D	60	64	anti-parallel
Strand 4	B	435	441	anti-parallel
Strand 5	B	417	429	anti-parallel
Strand 6	B	464	473	anti-parallel
Strand 7	B	483	490	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	69	first strand
Strand 2	B	389	401	parallel
Strand 3	B	90	102	anti-parallel
Strand 4	B	77	81	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	373	380	anti-parallel
Strand 3	B	279	297	anti-parallel
Strand 4	B	234	249	anti-parallel
Strand 5	B	192	199	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	199	first strand
Strand 2	B	234	249	anti-parallel
Strand 3	B	142	146	anti-parallel
Strand 4	B	157	160	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	279	297	anti-parallel
Strand 3	B	331	336	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	459	first strand
Strand 2	B	406	412	anti-parallel
Strand 3	B	495	502	parallel
Strand 4	B	507	514	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IMY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IMY