Analysis of interatomic Contacts of Structural Units in PDB entry:
5INE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5INE entry

There are 2 chains in PDB entry 5INE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 63LYS 427
B
 ASN 63ASP 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5INE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 85Right-handed 310
Helix 2
AA2
A
125 131Right-handed alpha
Helix 3
AA3
A
135 148Right-handed alpha
Helix 4
AA4
A
186 200Right-handed alpha
Helix 5
AA5
A
244 252Right-handed alpha
Helix 6
AA6
A
253 258Right-handed alpha
Helix 7
AA7
A
272 277Right-handed alpha
Helix 8
AA8
A
301 310Right-handed alpha
Helix 9
AA9
A
313 332Right-handed alpha
Helix 10
AB1
A
336 351Right-handed alpha
Helix 11
AB2
A
352 366Right-handed alpha
Helix 12
AB3
A
405 426Right-handed alpha
Helix 13
AB4
B
80 85Right-handed 310
Helix 14
AB5
B
125 131Right-handed alpha
Helix 15
AB6
B
135 148Right-handed alpha
Helix 16
AB7
B
186 200Right-handed alpha
Helix 17
AB8
B
244 252Right-handed alpha
Helix 18
AB9
B
253 258Right-handed alpha
Helix 19
AC1
B
300 308Right-handed alpha
Helix 20
AC2
B
313 332Right-handed alpha
Helix 21
AC3
B
336 351Right-handed alpha
Helix 22
AC4
B
352 366Right-handed alpha
Helix 23
AC5
B
405 424Right-handed alpha
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There are 7 sheets in PDB entry 5INE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
72 78anti-parallel
Strand 3
A
374 380anti-parallel
Strand 4
A
390 391anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
98 103anti-parallel
Strand 3
A
106 113anti-parallel
Strand 4
A
227 232anti-parallel
Strand 5
A
167 171anti-parallel
Strand 6
A
158 161anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 286first strand
Strand 2
A
297 299anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
72 78anti-parallel
Strand 3
B
374 380anti-parallel
Strand 4
B
390 391anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
98 103anti-parallel
Strand 3
B
106 113anti-parallel
Strand 4
B
227 232anti-parallel
Strand 5
B
167 171anti-parallel
Strand 6
B
158 161anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 286first strand
Strand 2
B
297 299anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 395first strand
Strand 2
B
398 399anti-parallel
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