Analysis of interatomic Contacts of Structural Units in PDB entry:
5INM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5INM entry

There are 5 chains in PDB entry 5INM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 122	VAL 369
B	GLU 119	VAL 369
C	THR 123	VAL 369
D	SER 122	VAL 369
E	SER 122	VAL 369

There are 33 helices in PDB entry 5INM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	138	154	Right-handed alpha
Helix 2	AA2	A	164	175	Right-handed alpha
Helix 3	AA3	A	243	261	Right-handed alpha
Helix 4	AA4	A	278	283	Right-handed alpha
Helix 5	AA5	A	293	297	Right-handed alpha
Helix 6	AA6	A	300	304	Right-handed 310
Helix 7	AA7	B	138	154	Right-handed alpha
Helix 8	AA8	B	164	175	Right-handed alpha
Helix 9	AA9	B	240	242	Right-handed 310
Helix 10	AB1	B	243	261	Right-handed alpha
Helix 11	AB2	B	278	283	Right-handed alpha
Helix 12	AB3	B	293	297	Right-handed alpha
Helix 13	AB4	B	300	304	Right-handed 310
Helix 14	AB5	C	138	154	Right-handed alpha
Helix 15	AB6	C	164	175	Right-handed alpha
Helix 16	AB7	C	240	242	Right-handed 310
Helix 17	AB8	C	243	261	Right-handed alpha
Helix 18	AB9	C	278	283	Right-handed alpha
Helix 19	AC1	C	293	297	Right-handed alpha
Helix 20	AC2	C	300	304	Right-handed 310
Helix 21	AC3	D	138	154	Right-handed alpha
Helix 22	AC4	D	164	175	Right-handed alpha
Helix 23	AC5	D	243	261	Right-handed alpha
Helix 24	AC6	D	281	285	Right-handed 310
Helix 25	AC7	D	293	297	Right-handed alpha
Helix 26	AC8	D	300	304	Right-handed 310
Helix 27	AC9	E	138	154	Right-handed alpha
Helix 28	AD1	E	164	175	Right-handed alpha
Helix 29	AD2	E	240	242	Right-handed 310
Helix 30	AD3	E	243	261	Right-handed alpha
Helix 31	AD4	E	278	284	Right-handed alpha
Helix 32	AD5	E	293	297	Right-handed alpha
Helix 33	AD6	E	300	304	Right-handed 310

There are 11 sheets in PDB entry 5INM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	182	first strand
Strand 2	A	189	195	anti-parallel
Strand 3	A	157	163	anti-parallel
Strand 4	A	123	130	parallel
Strand 5	A	361	368	anti-parallel
Strand 6	A	337	345	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	208	first strand
Strand 2	A	217	225	anti-parallel
Strand 3	A	228	235	anti-parallel
Strand 4	A	266	272	parallel
Strand 5	A	326	331	anti-parallel
Strand 6	A	291	292	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	322	323	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	182	first strand
Strand 2	B	189	195	anti-parallel
Strand 3	B	157	163	anti-parallel
Strand 4	B	122	130	parallel
Strand 5	B	361	368	anti-parallel
Strand 6	B	337	345	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	326	331	anti-parallel
Strand 3	B	266	272	anti-parallel
Strand 4	B	228	234	parallel
Strand 5	B	217	225	anti-parallel
Strand 6	B	199	208	anti-parallel
Strand 7	C	199	208	anti-parallel
Strand 8	C	217	225	anti-parallel
Strand 9	C	228	235	anti-parallel
Strand 10	C	266	272	parallel
Strand 11	C	326	331	anti-parallel
Strand 12	C	290	292	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	182	first strand
Strand 2	C	189	195	anti-parallel
Strand 3	C	157	163	anti-parallel
Strand 4	C	124	130	parallel
Strand 5	C	361	368	anti-parallel
Strand 6	C	337	345	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	182	first strand
Strand 2	D	189	195	anti-parallel
Strand 3	D	157	163	anti-parallel
Strand 4	D	123	130	parallel
Strand 5	D	361	368	anti-parallel
Strand 6	D	337	345	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	208	first strand
Strand 2	D	217	225	anti-parallel
Strand 3	D	228	235	anti-parallel
Strand 4	D	266	272	parallel
Strand 5	D	326	331	anti-parallel
Strand 6	D	291	292	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	308	first strand
Strand 2	D	322	323	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	182	first strand
Strand 2	E	189	195	anti-parallel
Strand 3	E	157	163	anti-parallel
Strand 4	E	123	130	parallel
Strand 5	E	361	368	anti-parallel
Strand 6	E	337	345	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	208	first strand
Strand 2	E	217	225	anti-parallel
Strand 3	E	228	235	anti-parallel
Strand 4	E	266	272	parallel
Strand 5	E	326	331	anti-parallel
Strand 6	E	290	292	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5INM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5INM