Analysis of interatomic Contacts of Structural Units in PDB entry:
5INT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5INT entry

There are 2 chains in PDB entry 5INT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 182ASP 399
B
 LEU 185ASP 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5INT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
213 226Right-handed alpha
Helix 2
AA2
A
252 265Right-handed alpha
Helix 3
AA3
A
305 313Right-handed alpha
Helix 4
AA4
A
328 340Right-handed alpha
Helix 5
AA5
A
380 399Right-handed alpha
Helix 6
AA6
B
213 226Right-handed alpha
Helix 7
AA7
B
252 265Right-handed alpha
Helix 8
AA8
B
305 314Right-handed alpha
Helix 9
AA9
B
330 340Right-handed alpha
Helix 10
AB1
B
350 353Right-handed 310
Helix 11
AB2
B
354 358Right-handed 310
Helix 12
AB3
B
380 398Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5INT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 249first strand
Strand 2
A
229 234parallel
Strand 3
A
189 194parallel
Strand 4
A
269 272parallel
Strand 5
A
318 324parallel
Strand 6
A
344 348parallel
Strand 7
A
362 368anti-parallel
Strand 8
A
373 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 202first strand
Strand 2
A
205 209anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 281first strand
Strand 2
A
300 302anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 249first strand
Strand 2
B
229 234parallel
Strand 3
B
189 194parallel
Strand 4
B
269 272parallel
Strand 5
B
318 323parallel
Strand 6
B
344 349parallel
Strand 7
B
362 368anti-parallel
Strand 8
B
373 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 200first strand
Strand 2
B
206 209anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il