Analysis of interatomic Contacts of Structural Units in PDB entry:
5INW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5INW entry

There are 4 chains in PDB entry 5INW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 73	ALA 416
B	SER 75	ALA 416
C	PRO 422	LYS 452
D	PRO 421	LYS 452

There are 23 helices in PDB entry 5INW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	96	Right-handed alpha
Helix 2	AA2	A	97	99	Right-handed 310
Helix 3	AA3	A	108	122	Right-handed alpha
Helix 4	AA4	A	124	136	Right-handed alpha
Helix 5	AA5	A	149	161	Right-handed alpha
Helix 6	AA6	A	184	196	Right-handed alpha
Helix 7	AA7	A	206	221	Right-handed alpha
Helix 8	AA8	A	317	325	Right-handed alpha
Helix 9	AA9	A	326	337	Right-handed alpha
Helix 10	AB1	A	359	366	Right-handed alpha
Helix 11	AB2	A	369	373	Right-handed 310
Helix 12	AB3	B	76	96	Right-handed alpha
Helix 13	AB4	B	97	99	Right-handed 310
Helix 14	AB5	B	108	122	Right-handed alpha
Helix 15	AB6	B	124	136	Right-handed alpha
Helix 16	AB7	B	150	161	Right-handed alpha
Helix 17	AB8	B	184	196	Right-handed alpha
Helix 18	AB9	B	206	221	Right-handed alpha
Helix 19	AC1	B	256	258	Right-handed 310
Helix 20	AC2	B	317	325	Right-handed alpha
Helix 21	AC3	B	326	337	Right-handed alpha
Helix 22	AC4	B	359	366	Right-handed alpha
Helix 23	AC5	B	369	373	Right-handed 310

There are 8 sheets in PDB entry 5INW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	C	442	448	anti-parallel
Strand 3	C	430	436	anti-parallel
Strand 4	A	305	312	anti-parallel
Strand 5	A	294	300	anti-parallel
Strand 6	A	286	289	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	167	178	anti-parallel
Strand 3	A	199	202	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	167	178	anti-parallel
Strand 3	A	237	250	anti-parallel
Strand 4	A	404	416	anti-parallel
Strand 5	A	388	400	anti-parallel
Strand 6	A	351	358	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	266	first strand
Strand 2	A	272	282	anti-parallel
Strand 3	A	344	349	anti-parallel
Strand 4	C	423	425	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	D	442	448	anti-parallel
Strand 3	D	430	436	anti-parallel
Strand 4	B	305	312	anti-parallel
Strand 5	B	294	300	anti-parallel
Strand 6	B	286	289	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	167	178	anti-parallel
Strand 3	B	199	202	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	167	178	anti-parallel
Strand 3	B	237	250	anti-parallel
Strand 4	B	404	416	anti-parallel
Strand 5	B	388	400	anti-parallel
Strand 6	B	351	358	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	266	first strand
Strand 2	B	272	282	anti-parallel
Strand 3	B	344	349	anti-parallel
Strand 4	D	423	425	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5INW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5INW