Analysis of interatomic Contacts of Structural Units in PDB entry:
5IO1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IO1 entry

There are 2 chains in PDB entry 5IO1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 24LYS 394
B
 ASN 24LYS 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5IO1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 45Right-handed alpha
Helix 2
AA2
A
53 68Right-handed alpha
Helix 3
AA3
A
69 80Right-handed alpha
Helix 4
AA4
A
88 104Right-handed alpha
Helix 5
AA5
A
127 137Right-handed alpha
Helix 6
AA6
A
149 165Right-handed alpha
Helix 7
AA7
A
259 267Right-handed alpha
Helix 8
AA8
A
268 277Right-handed alpha
Helix 9
AA9
A
299 307Right-handed alpha
Helix 10
AB1
B
26 45Right-handed alpha
Helix 11
AB2
B
53 68Right-handed alpha
Helix 12
AB3
B
69 80Right-handed alpha
Helix 13
AB4
B
88 104Right-handed alpha
Helix 14
AB5
B
127 137Right-handed alpha
Helix 15
AB6
B
149 165Right-handed alpha
Helix 16
AB7
B
259 267Right-handed alpha
Helix 17
AB8
B
268 277Right-handed alpha
Helix 18
AB9
B
299 307Right-handed alpha
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There are 7 sheets in PDB entry 5IO1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
382 388anti-parallel
Strand 3
A
370 375anti-parallel
Strand 4
A
248 255anti-parallel
Strand 5
A
237 244anti-parallel
Strand 6
A
214 232anti-parallel
Strand 7
A
204 209anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 289first strand
Strand 2
A
214 232anti-parallel
Strand 3
B
214 232anti-parallel
Strand 4
B
282 289anti-parallel
Strand 5
B
363 365parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
382 388anti-parallel
Strand 3
B
370 376anti-parallel
Strand 4
B
248 255anti-parallel
Strand 5
B
237 244anti-parallel
Strand 6
B
214 232anti-parallel
Strand 7
A
214 232anti-parallel
Strand 8
A
237 244anti-parallel
Strand 9
A
248 255anti-parallel
Strand 10
A
370 375anti-parallel
Strand 11
A
382 388anti-parallel
Strand 12
A
50 52anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 209first strand
Strand 2
A
214 232anti-parallel
Strand 3
A
282 289anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 365first strand
Strand 2
B
282 289parallel
Strand 3
B
214 232anti-parallel
Strand 4
B
204 209anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
112 121parallel
Strand 3
A
182 190anti-parallel
Strand 4
A
331 340parallel
Strand 5
A
291 298anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 145first strand
Strand 2
B
112 121parallel
Strand 3
B
182 190anti-parallel
Strand 4
B
331 340parallel
Strand 5
B
291 298anti-parallel
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