Analysis of interatomic Contacts of Structural Units in PDB entry:
5IO3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IO3 entry

There is 1 chain in PDB entry 5IO3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 49ASP 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5IO3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 62Right-handed 310
Helix 2
AA2
A
64 72Right-handed alpha
Helix 3
AA3
A
73 76Right-handed 310
Helix 4
AA4
A
136 150Right-handed alpha
Helix 5
AA5
A
151 153Right-handed 310
Helix 6
AA6
A
220 232Right-handed alpha
Helix 7
AA7
A
256 276Right-handed alpha
Helix 8
AA8
A
288 293Right-handed alpha
Helix 9
AA9
A
294 307Right-handed alpha
Helix 10
AB1
A
312 321Right-handed alpha
Helix 11
AB2
A
328 345Right-handed alpha
Helix 12
AB3
A
358 378Right-handed alpha
Helix 13
AB4
A
384 398Right-handed alpha
Helix 14
AB5
A
399 413Right-handed alpha
Helix 15
AB6
A
417 423Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5IO3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
310 311anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
99 104anti-parallel
Strand 3
A
110 114anti-parallel
Strand 4
A
157 167parallel
Strand 5
A
176 185anti-parallel
Strand 6
A
190 197anti-parallel
Strand 7
A
238 239parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
121 124anti-parallel
Strand 3
A
157 167parallel
Strand 4
A
176 185anti-parallel
Strand 5
A
190 197anti-parallel
Strand 6
A
243 246parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
426 427parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il