Analysis of interatomic Contacts of Structural Units in PDB entry:
5IP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IP4 entry

There are 4 chains in PDB entry 5IP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4SER 112
B
 VAL 4SER 113
D
 LYS 255GLY 334
E
 LYS 255PHE 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5IP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 76Right-handed 310
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
B
62 65Right-handed 310
Helix 4
AA4
B
87 91Right-handed 310
Helix 5
AA5
D
287 299Right-handed alpha
Helix 6
AA6
D
319 324Right-handed 310
Helix 7
AA7
E
287 300Right-handed alpha
Helix 8
AA8
E
319 323Right-handed 310
Helix 9
AA9
E
334 338Right-handed 310
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There are 8 sheets in PDB entry 5IP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
20 26anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
107 112parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
36 41anti-parallel
Strand 5
A
48 53anti-parallel
Strand 6
A
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
107 112parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
102 103anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
20 26anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
107 112parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
36 41anti-parallel
Strand 5
B
47 53anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
107 112parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
102 103anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
275 280first strand
Strand 2
D
261 268anti-parallel
Strand 3
D
329 333parallel
Strand 4
D
309 311anti-parallel
Strand 5
D
316 317anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
275 280first strand
Strand 2
E
261 267anti-parallel
Strand 3
E
329 333parallel
Strand 4
E
308 311anti-parallel
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