Analysis of interatomic Contacts of Structural Units in PDB entry:
5IPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IPW entry

There is 1 chain in PDB entry 5IPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 27GLN 659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5IPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 41Right-handed alpha
Helix 2
AA2
A
50 59Right-handed alpha
Helix 3
AA3
A
64 69Right-handed alpha
Helix 4
AA4
A
95 97Right-handed 310
Helix 5
AA5
A
98 107Right-handed alpha
Helix 6
AA6
A
154 165Right-handed alpha
Helix 7
AA7
A
176 181Right-handed alpha
Helix 8
AA8
A
201 207Right-handed 310
Helix 9
AA9
A
217 222Right-handed alpha
Helix 10
AB1
A
223 225Right-handed 310
Helix 11
AB2
A
230 236Right-handed alpha
Helix 12
AB3
A
245 254Right-handed alpha
Helix 13
AB4
A
310 320Right-handed alpha
Helix 14
AB5
A
329 334Right-handed alpha
Helix 15
AB6
A
336 351Right-handed alpha
Helix 16
AB7
A
375 384Right-handed alpha
Helix 17
AB8
A
384 394Right-handed alpha
Helix 18
AB9
A
396 405Right-handed alpha
Helix 19
AC1
A
424 430Right-handed alpha
Helix 20
AC2
A
435 447Right-handed alpha
Helix 21
AC3
A
473 489Right-handed alpha
Helix 22
AC4
A
500 511Right-handed alpha
Helix 23
AC5
A
525 529Right-handed 310
Helix 24
AC6
A
542 547Right-handed 310
Helix 25
AC7
A
548 560Right-handed alpha
Helix 26
AC8
A
575 591Right-handed alpha
Helix 27
AC9
A
593 611Right-handed alpha
Helix 28
AD1
A
647 655Right-handed 310
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There are 8 sheets in PDB entry 5IPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
74 77anti-parallel
Strand 3
A
289 291parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
302 307parallel
Strand 3
A
278 283anti-parallel
Strand 4
A
268 270anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
120 122anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 131first strand
Strand 2
A
136 141anti-parallel
Strand 3
A
192 197anti-parallel
Strand 4
A
183 189anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
625 628anti-parallel
Strand 3
A
352 355anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 359first strand
Strand 2
A
639 640parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 498first strand
Strand 2
A
466 471parallel
Strand 3
A
515 520parallel
Strand 4
A
363 369anti-parallel
Strand 5
A
615 617anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 632first strand
Strand 2
A
656 657anti-parallel
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