Analysis of interatomic Contacts of Structural Units in PDB entry:
5IRM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IRM entry

There are 2 chains in PDB entry 5IRM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 193LEU 1020
C
 GLU 193ALA 760
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 5IRM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
193 215Right-handed alpha
Helix 2
AA2
A
227 232Right-handed alpha
Helix 3
AA3
A
257 261Right-handed 310
Helix 4
AA4
A
284 298Right-handed alpha
Helix 5
AA5
A
313 318Right-handed alpha
Helix 6
AA6
A
324 332Right-handed alpha
Helix 7
AA7
A
339 350Right-handed alpha
Helix 8
AA8
A
360 364Right-handed 310
Helix 9
AA9
A
382 392Right-handed alpha
Helix 10
AB1
A
406 410Right-handed 310
Helix 11
AB2
A
411 416Right-handed alpha
Helix 12
AB3
A
428 440Right-handed alpha
Helix 13
AB4
A
444 455Right-handed alpha
Helix 14
AB5
A
456 463Right-handed alpha
Helix 15
AB6
A
465 475Right-handed alpha
Helix 16
AB7
A
475 482Right-handed alpha
Helix 17
AB8
A
489 505Right-handed alpha
Helix 18
AB9
A
516 523Right-handed alpha
Helix 19
AC1
A
523 540Right-handed alpha
Helix 20
AC2
A
546 554Right-handed alpha
Helix 21
AC3
A
556 562Right-handed alpha
Helix 22
AC4
A
583 598Right-handed alpha
Helix 23
AC5
A
602 605Right-handed 310
Helix 24
AC6
A
606 611Right-handed alpha
Helix 25
AC7
A
637 646Right-handed alpha
Helix 26
AC8
A
647 662Right-handed alpha
Helix 27
AC9
A
663 670Right-handed alpha
Helix 28
AD1
A
671 674Right-handed 310
Helix 29
AD2
A
678 700Right-handed alpha
Helix 30
AD3
A
716 730Right-handed alpha
Helix 31
AD4
A
731 740Right-handed alpha
Helix 32
AD5
A
755 767Right-handed alpha
Helix 33
AD6
A
782 791Right-handed alpha
Helix 34
AD7
A
792 795Right-handed 310
Helix 35
AD8
A
808 820Right-handed alpha
Helix 36
AD9
A
836 838Right-handed 310
Helix 37
AE1
A
839 850Right-handed alpha
Helix 38
AE2
A
864 878Right-handed alpha
Helix 39
AE3
A
891 904Right-handed alpha
Helix 40
AE4
A
920 934Right-handed alpha
Helix 41
AE5
A
947 962Right-handed alpha
Helix 42
AE6
A
978 990Right-handed alpha
Helix 43
AE7
A
1004 1015Right-handed alpha
Helix 44
AE8
C
194 215Right-handed alpha
Helix 45
AE9
C
227 232Right-handed alpha
Helix 46
AF1
C
257 261Right-handed 310
Helix 47
AF2
C
284 298Right-handed alpha
Helix 48
AF3
C
313 318Right-handed alpha
Helix 49
AF4
C
324 332Right-handed alpha
Helix 50
AF5
C
339 350Right-handed alpha
Helix 51
AF6
C
360 364Right-handed 310
Helix 52
AF7
C
382 392Right-handed alpha
Helix 53
AF8
C
411 418Right-handed alpha
Helix 54
AF9
C
428 440Right-handed alpha
Helix 55
AG1
C
444 455Right-handed alpha
Helix 56
AG2
C
456 463Right-handed alpha
Helix 57
AG3
C
465 475Right-handed alpha
Helix 58
AG4
C
475 482Right-handed alpha
Helix 59
AG5
C
489 505Right-handed alpha
Helix 60
AG6
C
517 523Right-handed alpha
Helix 61
AG7
C
523 540Right-handed alpha
Helix 62
AG8
C
546 554Right-handed alpha
Helix 63
AG9
C
556 562Right-handed alpha
Helix 64
AH1
C
583 598Right-handed alpha
Helix 65
AH2
C
602 611Right-handed alpha
Helix 66
AH3
C
637 646Right-handed alpha
Helix 67
AH4
C
647 662Right-handed alpha
Helix 68
AH5
C
663 670Right-handed alpha
Helix 69
AH6
C
671 674Right-handed 310
Helix 70
AH7
C
678 700Right-handed alpha
Helix 71
AH8
C
716 730Right-handed alpha
Helix 72
AH9
C
731 740Right-handed alpha
Helix 73
AI1
C
755 767Right-handed alpha
Helix 74
AI2
C
782 791Right-handed alpha
Helix 75
AI3
C
792 795Right-handed 310
Helix 76
AI4
C
808 820Right-handed alpha
Helix 77
AI5
C
836 838Right-handed 310
Helix 78
AI6
C
839 850Right-handed alpha
Helix 79
AI7
C
864 878Right-handed alpha
Helix 80
AI8
C
891 904Right-handed alpha
Helix 81
AI9
C
920 934Right-handed alpha
Helix 82
AJ1
C
947 962Right-handed alpha
Helix 83
AJ2
C
978 990Right-handed alpha
Helix 84
AJ3
C
1004 1015Right-handed alpha
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There are 6 sheets in PDB entry 5IRM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
237 239anti-parallel
Strand 3
A
420 424anti-parallel
Strand 4
A
274 278parallel
Strand 5
A
400 405parallel
Strand 6
A
354 359parallel
Strand 7
A
307 312parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 567first strand
Strand 2
A
579 581anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
746 748first strand
Strand 2
A
773 776parallel
Strand 3
A
797 801parallel
Strand 4
A
827 829parallel
Strand 5
A
855 857parallel
Strand 6
A
883 885parallel
Strand 7
A
911 913parallel
Strand 8
A
939 941parallel
Strand 9
A
967 969parallel
Strand 10
A
995 997parallel
Strand 11
A
1018 1019parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
255 256first strand
Strand 2
C
237 239anti-parallel
Strand 3
C
420 424anti-parallel
Strand 4
C
274 278parallel
Strand 5
C
400 405parallel
Strand 6
C
354 359parallel
Strand 7
C
307 312parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
565 567first strand
Strand 2
C
579 581anti-parallel
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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
746 748first strand
Strand 2
C
773 776parallel
Strand 3
C
797 801parallel
Strand 4
C
827 829parallel
Strand 5
C
855 857parallel
Strand 6
C
883 885parallel
Strand 7
C
911 913parallel
Strand 8
C
939 941parallel
Strand 9
C
967 969parallel
Strand 10
C
995 997parallel
Strand 11
C
1018 1019parallel
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