Analysis of interatomic Contacts of Structural Units in PDB entry:
5ISW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ISW entry

There is 1 chain in PDB entry 5ISW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 538PHE 1076
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5ISW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
539 556Right-handed alpha
Helix 2
AA2
A
572 585Right-handed alpha
Helix 3
AA3
A
591 598Right-handed alpha
Helix 4
AA4
A
600 605Right-handed alpha
Helix 5
AA5
A
606 608Right-handed 310
Helix 6
AA6
A
627 637Right-handed alpha
Helix 7
AA7
A
657 672Right-handed alpha
Helix 8
AA8
A
673 675Right-handed 310
Helix 9
AA9
A
710 724Right-handed alpha
Helix 10
AB1
A
754 756Right-handed 310
Helix 11
AB2
A
757 777Right-handed alpha
Helix 12
AB3
A
789 801Right-handed alpha
Helix 13
AB4
A
803 808Right-handed alpha
Helix 14
AB5
A
809 819Right-handed 310
Helix 15
AB6
A
835 837Right-handed 310
Helix 16
AB7
A
847 857Right-handed alpha
Helix 17
AB8
A
865 883Right-handed alpha
Helix 18
AB9
A
927 940Right-handed alpha
Helix 19
AC1
A
941 946Right-handed 310
Helix 20
AC2
A
947 955Right-handed alpha
Helix 21
AC3
A
980 985Right-handed alpha
Helix 22
AC4
A
1041 1066Right-handed alpha
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There are 4 sheets in PDB entry 5ISW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 589first strand
Strand 2
A
609 610anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 624first strand
Strand 2
A
685 690anti-parallel
Strand 3
A
677 682anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
699 704first strand
Strand 2
A
734 741parallel
Strand 3
A
744 752anti-parallel
Strand 4
A
645 652anti-parallel
Strand 5
A
990 991anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
839 845first strand
Strand 2
A
1028 1036anti-parallel
Strand 3
A
1018 1025anti-parallel
Strand 4
A
972 979parallel
Strand 5
A
886 893parallel
Strand 6
A
914 921anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il