Analysis of interatomic Contacts of Structural Units in PDB entry:
5ITP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ITP entry

There are 2 chains in PDB entry 5ITP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 28PRO 281
B
 TYR 28PRO 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5ITP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 67Right-handed alpha
Helix 2
AA2
A
79 86Right-handed alpha
Helix 3
AA3
A
99 104Right-handed alpha
Helix 4
AA4
A
125 130Right-handed 310
Helix 5
AA5
A
143 157Right-handed alpha
Helix 6
AA6
A
168 178Right-handed alpha
Helix 7
AA7
A
188 198Right-handed alpha
Helix 8
AA8
A
208 217Right-handed alpha
Helix 9
AA9
A
218 221Right-handed 310
Helix 10
AB1
A
232 236Right-handed 310
Helix 11
AB2
A
247 264Right-handed alpha
Helix 12
AB3
A
265 276Right-handed alpha
Helix 13
AB4
B
53 67Right-handed alpha
Helix 14
AB5
B
79 86Right-handed alpha
Helix 15
AB6
B
99 104Right-handed alpha
Helix 16
AB7
B
125 130Right-handed 310
Helix 17
AB8
B
143 158Right-handed alpha
Helix 18
AB9
B
168 178Right-handed alpha
Helix 19
AC1
B
188 198Right-handed alpha
Helix 20
AC2
B
208 217Right-handed alpha
Helix 21
AC3
B
218 221Right-handed 310
Helix 22
AC4
B
232 236Right-handed 310
Helix 23
AC5
B
247 264Right-handed alpha
Helix 24
AC6
B
265 276Right-handed alpha
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There are 9 sheets in PDB entry 5ITP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
30 35parallel
Strand 3
A
91 92parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
51 52anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
242 243anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 138first strand
Strand 2
A
223 231parallel
Strand 3
A
117 122anti-parallel
Strand 4
A
203 207anti-parallel
Strand 5
A
162 165parallel
Strand 6
A
183 186parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 74first strand
Strand 2
B
30 35parallel
Strand 3
B
91 92parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
51 52anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
242 243anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 138first strand
Strand 2
B
223 231parallel
Strand 3
B
117 122anti-parallel
Strand 4
B
203 207anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
183 186parallel
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