Analysis of interatomic Contacts of Structural Units in PDB entry:
5IUM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IUM entry

There are 4 chains in PDB entry 5IUM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 154LEU 187
A
 ASP 189ASN 368
B
 GLU 165LEU 187
B
 ASP 189SER 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5IUM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
156 190Right-handed alpha
Helix 2
AA2
A
190 212Right-handed alpha
Helix 3
AA3
A
212 242Right-handed alpha
Helix 4
AA4
A
245 260Right-handed alpha
Helix 5
AA5
A
276 298Right-handed alpha
Helix 6
AA6
A
336 347Right-handed alpha
Helix 7
AA7
B
166 212Right-handed alpha
Helix 8
AA8
B
212 231Right-handed alpha
Helix 9
AA9
B
231 240Right-handed alpha
Helix 10
AB1
B
243 260Right-handed alpha
Helix 11
AB2
B
276 298Right-handed alpha
Helix 12
AB3
B
335 347Right-handed alpha
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There are 2 sheets in PDB entry 5IUM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
302 310parallel
Strand 3
A
313 320anti-parallel
Strand 4
A
359 366anti-parallel
Strand 5
A
350 354anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 310first strand
Strand 2
B
313 318anti-parallel
Strand 3
B
362 366anti-parallel
Strand 4
B
350 352anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il