Analysis of interatomic Contacts of Structural Units in PDB entry:
5IUY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IUY entry

There are 3 chains in PDB entry 5IUY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 1PRO 445
B
 CYS 1PRO 445
C
 CYS 1HIS 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 49 helices in PDB entry 5IUY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 21Right-handed 310
Helix 2
AA2
A
33 39Right-handed 310
Helix 3
AA3
A
40 54Right-handed alpha
Helix 4
AA4
A
54 77Right-handed alpha
Helix 5
AA5
A
122 190Right-handed alpha
Helix 6
AA6
A
194 230Right-handed alpha
Helix 7
AA7
A
233 237Right-handed 310
Helix 8
AA8
A
257 259Right-handed 310
Helix 9
AA9
A
260 265Right-handed alpha
Helix 10
AB1
A
265 288Right-handed alpha
Helix 11
AB2
A
305 309Right-handed 310
Helix 12
AB3
A
311 313Right-handed 310
Helix 13
AB4
A
326 328Right-handed 310
Helix 14
AB5
A
329 399Right-handed alpha
Helix 15
AB6
A
403 439Right-handed alpha
Helix 16
AB7
B
17 22Right-handed 310
Helix 17
AB8
B
33 39Right-handed 310
Helix 18
AB9
B
40 54Right-handed alpha
Helix 19
AC1
B
54 76Right-handed alpha
Helix 20
AC2
B
77 79Right-handed 310
Helix 21
AC3
B
122 190Right-handed alpha
Helix 22
AC4
B
194 230Right-handed alpha
Helix 23
AC5
B
233 237Right-handed 310
Helix 24
AC6
B
257 259Right-handed 310
Helix 25
AC7
B
260 265Right-handed alpha
Helix 26
AC8
B
265 287Right-handed alpha
Helix 27
AC9
B
288 290Right-handed 310
Helix 28
AD1
B
305 309Right-handed 310
Helix 29
AD2
B
311 313Right-handed 310
Helix 30
AD3
B
326 328Right-handed 310
Helix 31
AD4
B
329 400Right-handed alpha
Helix 32
AD5
B
403 440Right-handed alpha
Helix 33
AD6
C
17 21Right-handed 310
Helix 34
AD7
C
33 39Right-handed 310
Helix 35
AD8
C
40 54Right-handed alpha
Helix 36
AD9
C
54 76Right-handed alpha
Helix 37
AE1
C
77 79Right-handed 310
Helix 38
AE2
C
122 190Right-handed alpha
Helix 39
AE3
C
194 231Right-handed alpha
Helix 40
AE4
C
257 259Right-handed 310
Helix 41
AE5
C
260 265Right-handed alpha
Helix 42
AE6
C
265 287Right-handed alpha
Helix 43
AE7
C
288 290Right-handed 310
Helix 44
AE8
C
305 309Right-handed 310
Helix 45
AE9
C
311 313Right-handed 310
Helix 46
AF1
C
326 328Right-handed 310
Helix 47
AF2
C
329 399Right-handed alpha
Helix 48
AF3
C
403 439Right-handed alpha
Helix 49
AF4
C
446 450Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 5IUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
253 254parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
292 303anti-parallel
Strand 3
A
99 115anti-parallel
Strand 4
A
81 95anti-parallel
Strand 5
C
315 325anti-parallel
Strand 6
C
292 303anti-parallel
Strand 7
C
108 118anti-parallel
Strand 8
C
81 88anti-parallel
Strand 9
B
315 325anti-parallel
Strand 10
C
90 95anti-parallel
Strand 11
C
99 105anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
292 303anti-parallel
Strand 3
A
315 325anti-parallel
Strand 4
B
81 95anti-parallel
Strand 5
B
99 117anti-parallel
Strand 6
B
292 303anti-parallel
Strand 7
B
315 325anti-parallel
Strand 8
C
90 95anti-parallel
Strand 9
C
99 105anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
253 254parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 26first strand
Strand 2
C
253 254parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il