Analysis of interatomic Contacts of Structural Units in PDB entry:
5IV8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IV8 entry

There are 3 chains in PDB entry 5IV8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 220	LEU 781
B	GLY 20	ALA 169
C	SER 225	SER 779

There are 23 helices in PDB entry 5IV8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	301	Right-handed alpha
Helix 2	AA2	A	337	342	Right-handed alpha
Helix 3	AA3	A	462	469	Right-handed alpha
Helix 4	AA4	A	497	499	Right-handed 310
Helix 5	AA5	A	533	538	Right-handed 310
Helix 6	AA6	A	656	664	Right-handed alpha
Helix 7	AA7	B	45	58	Right-handed alpha
Helix 8	AA8	B	129	131	Right-handed 310
Helix 9	AA9	B	132	157	Right-handed alpha
Helix 10	AB1	B	158	164	Right-handed alpha
Helix 11	AB2	C	294	299	Right-handed alpha
Helix 12	AB3	C	462	469	Right-handed alpha
Helix 13	AB4	C	497	499	Right-handed 310
Helix 14	AB5	C	533	537	Right-handed 310
Helix 15	AB6	C	627	629	Right-handed 310
Helix 16	AB7	C	656	664	Right-handed alpha
Helix 17	AB8	C	664	669	Right-handed alpha
Helix 18	AB9	C	670	675	Right-handed alpha
Helix 19	AC1	D	30	33	Right-handed 310
Helix 20	AC2	D	45	58	Right-handed alpha
Helix 21	AC3	D	129	131	Right-handed 310
Helix 22	AC4	D	132	157	Right-handed alpha
Helix 23	AC5	D	158	164	Right-handed alpha

There are 6 sheets in PDB entry 5IV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	246	251	anti-parallel
Strand 3	A	254	263	anti-parallel
Strand 4	A	239	243	anti-parallel
Strand 5	A	231	235	anti-parallel
Strand 6	A	742	752	anti-parallel
Strand 7	A	722	735	anti-parallel
Strand 8	A	707	717	anti-parallel
Strand 9	A	692	701	anti-parallel
Strand 10	A	677	686	anti-parallel
Strand 11	A	647	655	anti-parallel
Strand 12	A	630	641	anti-parallel
Strand 13	A	616	625	anti-parallel
Strand 14	A	600	610	anti-parallel
Strand 15	A	569	580	anti-parallel
Strand 16	A	551	563	anti-parallel
Strand 17	A	501	513	anti-parallel
Strand 18	A	492	495	anti-parallel

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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	246	251	anti-parallel
Strand 3	A	254	263	anti-parallel
Strand 4	A	268	278	anti-parallel
Strand 5	A	283	291	anti-parallel
Strand 6	A	309	320	anti-parallel
Strand 7	A	324	333	anti-parallel
Strand 8	A	353	364	anti-parallel
Strand 9	A	367	378	anti-parallel
Strand 10	A	387	402	anti-parallel
Strand 11	A	405	418	anti-parallel
Strand 12	A	425	440	anti-parallel
Strand 13	A	444	460	anti-parallel
Strand 14	A	476	490	anti-parallel
Strand 15	A	501	513	anti-parallel
Strand 16	A	492	495	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	35	40	parallel
Strand 3	B	74	89	parallel
Strand 4	B	95	109	anti-parallel
Strand 5	B	115	127	anti-parallel

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There are 19 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	246	251	anti-parallel
Strand 3	C	254	263	anti-parallel
Strand 4	C	240	243	anti-parallel
Strand 5	C	231	235	anti-parallel
Strand 6	C	745	752	anti-parallel
Strand 7	C	723	731	anti-parallel
Strand 8	C	706	716	anti-parallel
Strand 9	C	693	701	anti-parallel
Strand 10	C	677	686	anti-parallel
Strand 11	C	646	655	anti-parallel
Strand 12	C	630	643	anti-parallel
Strand 13	C	616	625	anti-parallel
Strand 14	C	600	610	anti-parallel
Strand 15	C	569	580	anti-parallel
Strand 16	C	551	563	anti-parallel
Strand 17	C	501	513	anti-parallel
Strand 18	C	492	495	anti-parallel
Strand 19	D	22	23	anti-parallel

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There are 17 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	246	251	anti-parallel
Strand 3	C	254	263	anti-parallel
Strand 4	C	268	278	anti-parallel
Strand 5	C	283	291	anti-parallel
Strand 6	C	309	320	anti-parallel
Strand 7	C	324	333	anti-parallel
Strand 8	C	353	364	anti-parallel
Strand 9	C	367	378	anti-parallel
Strand 10	C	387	402	anti-parallel
Strand 11	C	405	418	anti-parallel
Strand 12	C	425	440	anti-parallel
Strand 13	C	444	460	anti-parallel
Strand 14	C	476	490	anti-parallel
Strand 15	C	501	513	anti-parallel
Strand 16	C	492	495	anti-parallel
Strand 17	D	22	23	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	63	first strand
Strand 2	D	35	40	parallel
Strand 3	D	74	89	parallel
Strand 4	D	95	109	anti-parallel
Strand 5	D	115	127	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IV8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IV8