Analysis of interatomic Contacts of Structural Units in PDB entry:
5IVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IVA entry

There are 2 chains in PDB entry 5IVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 39LYS 645
B
 ASN 3ARG 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 5IVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
155 160Right-handed alpha
Helix 2
AA2
A
255 260Right-handed 310
Helix 3
AA3
A
261 266Right-handed 310
Helix 4
AA4
A
305 310Right-handed alpha
Helix 5
AA5
A
310 316Right-handed alpha
Helix 6
AA6
A
381 386Right-handed 310
Helix 7
AA7
A
441 446Right-handed alpha
Helix 8
AA8
B
31 45Right-handed alpha
Helix 9
AA9
B
92 94Right-handed 310
Helix 10
AB1
B
114 143Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5IVA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 615first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
60 63anti-parallel
Strand 4
A
74 83anti-parallel
Strand 5
A
66 68anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
74 83anti-parallel
Strand 3
A
89 98anti-parallel
Strand 4
A
101 111anti-parallel
Strand 5
A
126 136anti-parallel
Strand 6
A
142 151anti-parallel
Strand 7
A
171 181anti-parallel
Strand 8
A
185 196anti-parallel
Strand 9
A
206 216anti-parallel
Strand 10
A
225 236anti-parallel
Strand 11
A
267 278anti-parallel
Strand 12
A
286 302anti-parallel
Strand 13
A
281 282anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
286 302anti-parallel
Strand 3
A
321 335anti-parallel
Strand 4
A
346 361anti-parallel
Strand 5
A
340 343anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 343first strand
Strand 2
A
346 361anti-parallel
Strand 3
A
399 412anti-parallel
Strand 4
A
416 428anti-parallel
Strand 5
A
463 471anti-parallel
Strand 6
A
475 484anti-parallel
Strand 7
A
489 499anti-parallel
Strand 8
A
508 516anti-parallel
Strand 9
A
538 548anti-parallel
Strand 10
A
553 562anti-parallel
Strand 11
A
567 578anti-parallel
Strand 12
A
583 596anti-parallel
Strand 13
A
602 615anti-parallel
Strand 14
A
51 54anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
251 253anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 338first strand
Strand 2
B
8 9anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
529 531anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
55 70parallel
Strand 3
B
76 90anti-parallel
Strand 4
B
96 109anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il