Analysis of interatomic Contacts of Structural Units in PDB entry:
5IVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IVK entry

There is 1 chain in PDB entry 5IVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5PHE 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5IVK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 27Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
152 156Right-handed 310
Helix 4
AA4
A
167 173Right-handed alpha
Helix 5
AA5
A
177 181Right-handed 310
Helix 6
AA6
A
185 202Right-handed alpha
Helix 7
AA7
A
203 205Right-handed 310
Helix 8
AA8
A
218 230Right-handed alpha
Helix 9
AA9
A
231 234Right-handed 310
Helix 10
AB1
A
249 253Right-handed 310
Helix 11
AB2
A
258 267Right-handed alpha
Helix 12
AB3
A
274 285Right-handed alpha
Helix 13
AB4
A
286 293Right-handed alpha
Helix 14
AB5
A
294 297Right-handed 310
Helix 15
AB6
A
299 305Right-handed alpha
Helix 16
AB7
A
328 336Right-handed alpha
Helix 17
AB8
A
337 341Right-handed 310
Helix 18
AB9
A
350 356Right-handed 310
Helix 19
AC1
A
357 362Right-handed alpha
Helix 20
AC2
A
363 371Right-handed 310
Helix 21
AC3
A
372 376Right-handed 310
Helix 22
AC4
A
377 381Right-handed 310
Helix 23
AC5
A
387 402Right-handed alpha
Helix 24
AC6
A
408 421Right-handed alpha
Helix 25
AC7
A
421 433Right-handed alpha
Helix 26
AC8
A
456 461Right-handed alpha
Helix 27
AC9
A
472 478Right-handed 310
Helix 28
AD1
A
491 511Right-handed alpha
Helix 29
AD2
A
552 561Right-handed alpha
Helix 30
AD3
A
562 564Right-handed 310
Helix 31
AD4
A
566 570Right-handed 310
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There are 3 sheets in PDB entry 5IVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 37first strand
Strand 2
A
40 48anti-parallel
Strand 3
A
85 87parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 37first strand
Strand 2
A
40 48anti-parallel
Strand 3
A
54 62anti-parallel
Strand 4
A
113 118anti-parallel
Strand 5
A
159 163anti-parallel
Strand 6
A
127 133parallel
Strand 7
A
207 217parallel
Strand 8
A
239 243parallel
Strand 9
A
343 348parallel
Strand 10
A
441 446parallel
Strand 11
A
537 541parallel
Strand 12
A
545 549anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
105 106anti-parallel
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