Analysis of interatomic Contacts of Structural Units in PDB entry:
5IVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IVV entry

There is 1 chain in PDB entry 5IVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12THR 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5IVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 30Right-handed 310
Helix 2
AA2
A
31 44Right-handed alpha
Helix 3
AA3
A
363 379Right-handed alpha
Helix 4
AA4
A
381 385Right-handed 310
Helix 5
AA5
A
386 400Right-handed alpha
Helix 6
AA6
A
415 419Right-handed alpha
Helix 7
AA7
A
432 434Right-handed 310
Helix 8
AA8
A
435 441Right-handed alpha
Helix 9
AA9
A
444 448Right-handed 310
Helix 10
AB1
A
485 489Right-handed 310
Helix 11
AB2
A
507 509Right-handed 310
Helix 12
AB3
A
510 522Right-handed alpha
Helix 13
AB4
A
523 527Right-handed 310
Helix 14
AB5
A
530 535Right-handed alpha
Helix 15
AB6
A
541 548Right-handed alpha
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There are 3 sheets in PDB entry 5IVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
48 51parallel
Strand 3
A
562 565anti-parallel
Strand 4
A
490 498anti-parallel
Strand 5
A
579 586anti-parallel
Strand 6
A
470 474anti-parallel
Strand 7
A
406 414anti-parallel
Strand 8
A
73 76anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
361 362anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 483first strand
Strand 2
A
571 575anti-parallel
Strand 3
A
501 505anti-parallel
Strand 4
A
553 557anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il