Analysis of interatomic Contacts of Structural Units in PDB entry:
5IW8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IW8 entry

There are 2 chains in PDB entry 5IW8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3LEU 317
B
 ARG 3LEU 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 5IW8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed 310
Helix 2
AA2
A
43 45Right-handed 310
Helix 3
AA3
A
51 65Right-handed alpha
Helix 4
AA4
A
80 93Right-handed alpha
Helix 5
AA5
A
106 116Right-handed alpha
Helix 6
AA6
A
127 142Right-handed alpha
Helix 7
AA7
A
154 164Right-handed alpha
Helix 8
AA8
A
164 173Right-handed alpha
Helix 9
AA9
A
186 200Right-handed alpha
Helix 10
AB1
A
243 259Right-handed alpha
Helix 11
AB2
A
263 283Right-handed alpha
Helix 12
AB3
A
297 304Right-handed 310
Helix 13
AB4
A
309 317Right-handed alpha
Helix 14
AB5
B
6 10Right-handed 310
Helix 15
AB6
B
51 65Right-handed alpha
Helix 16
AB7
B
79 93Right-handed alpha
Helix 17
AB8
B
106 110Right-handed 310
Helix 18
AB9
B
124 126Right-handed 310
Helix 19
AC1
B
127 141Right-handed alpha
Helix 20
AC2
B
154 164Right-handed alpha
Helix 21
AC3
B
164 173Right-handed alpha
Helix 22
AC4
B
186 200Right-handed alpha
Helix 23
AC5
B
216 220Right-handed 310
Helix 24
AC6
B
243 259Right-handed alpha
Helix 25
AC7
B
263 284Right-handed alpha
Helix 26
AC8
B
297 304Right-handed 310
Helix 27
AC9
B
309 317Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5IW8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
35 41anti-parallel
Strand 3
A
287 293parallel
Strand 4
A
178 182parallel
Strand 5
A
204 210parallel
Strand 6
A
238 242parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
96 102parallel
Strand 3
A
73 76parallel
Strand 4
A
146 148parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
35 41anti-parallel
Strand 3
B
287 293parallel
Strand 4
B
178 182parallel
Strand 5
B
204 210parallel
Strand 6
B
238 242parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
96 102parallel
Strand 3
B
73 76parallel
Strand 4
B
146 148parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il