Analysis of interatomic Contacts of Structural Units in PDB entry:
5IX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IX8 entry

There are 2 chains in PDB entry 5IX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 40ILE 357
B
 ASP 40ALA 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5IX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 83Right-handed alpha
Helix 2
AA2
A
98 113Right-handed alpha
Helix 3
AA3
A
127 137Right-handed alpha
Helix 4
AA4
A
160 175Right-handed alpha
Helix 5
AA5
A
192 208Right-handed alpha
Helix 6
AA6
A
222 237Right-handed alpha
Helix 7
AA7
A
247 261Right-handed alpha
Helix 8
AA8
A
275 282Right-handed alpha
Helix 9
AA9
A
292 310Right-handed alpha
Helix 10
AB1
A
344 349Right-handed alpha
Helix 11
AB2
B
67 83Right-handed alpha
Helix 12
AB3
B
98 112Right-handed alpha
Helix 13
AB4
B
127 137Right-handed alpha
Helix 14
AB5
B
160 175Right-handed alpha
Helix 15
AB6
B
192 208Right-handed alpha
Helix 16
AB7
B
222 237Right-handed alpha
Helix 17
AB8
B
247 261Right-handed alpha
Helix 18
AB9
B
275 282Right-handed alpha
Helix 19
AC1
B
292 310Right-handed alpha
Helix 20
AC2
B
344 349Right-handed alpha
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There are 4 sheets in PDB entry 5IX8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 92first strand
Strand 2
A
56 61parallel
Strand 3
A
116 119parallel
Strand 4
A
140 144parallel
Strand 5
A
155 158parallel
Strand 6
A
327 329parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
181 184parallel
Strand 3
A
240 244parallel
Strand 4
A
266 270parallel
Strand 5
A
285 289parallel
Strand 6
A
334 335anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 92first strand
Strand 2
B
56 61parallel
Strand 3
B
116 119parallel
Strand 4
B
140 144parallel
Strand 5
B
155 158parallel
Strand 6
B
327 329parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 212first strand
Strand 2
B
181 184parallel
Strand 3
B
240 244parallel
Strand 4
B
266 270parallel
Strand 5
B
285 289parallel
Strand 6
B
334 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il